Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_008993.1 Length=5530 Score E Sequences producing significant alignments: (Bits) Value seq751 136 1e-28 seq757 129 2e-26 seq501 122 3e-24 seq426 122 3e-24 seq477 120 1e-23 seq2321 118 4e-23 seq421 113 2e-21 seq758 111 6e-21 seq454 104 8e-19 seq418 102 3e-18 seq765 98.7 3e-17 seq419 98.7 3e-17 seq767 93.3 1e-15 seq754 91.5 5e-15 seq490 91.5 5e-15 seq745 89.7 2e-14 seq420 86.0 2e-13 seq415 86.0 2e-13 >seq751 Length=6993210 Score = 136 bits (150), Expect = 1e-28 Identities = 175/244 (72%), Gaps = 21/244 (9%) Strand=Plus/Plus Query 3933 TTGTTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTT 3992 || |||| | |||||| ||||||| |||| |||||| |||||||||||||| ||||| Sbjct 4847577 TTTTTTTTTCCCCTCCGGGCGGAAAGTGGCATCTTTCGTCCCGCTGCGCTAAACAAAGTT 4847636 Query 3993 GCCACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAG-AAAAAAGT 4051 | | | ||||| || ||||| | |||||| || |||| ||| ||| || |||||||| Sbjct 4847637 GGCGCTTTCCGCCTTTGTCGGACAAAAAAATTGTATACAGCCCTTGGCAAGTAAAAAAGT 4847696 Query 4052 AAAGCCTCAGACCACATGTTTGT-----TTGGNNNNNNNNNNNNNNNNNNNNNTCGGCCA 4106 |||||||||| ||||||||||| |||| || |||| Sbjct 4847697 -AAGCCTCAGATCACATGTTTGTCGACCTTGG--------------CTTCGCCTCCGCCA 4847741 Query 4107 ACAGTTACATGTGATCTGAGACTTTTGTTATTTTTCTGGCCTACGTATGTAATATACTAT 4166 ||| ||||||||| |||||| ||||| ||||||| || || | ||||||||||||| Sbjct 4847742 ACAATTACATGTGGTCTGAGGCTTTTCTTATTTTCCTTCCCAAAAGGTGTAATATACTAT 4847801 Query 4167 TCTT 4170 | || Sbjct 4847802 TTTT 4847805 >seq757 Length=6395444 Score = 129 bits (142), Expect = 2e-26 Identities = 173/239 (72%), Gaps = 26/239 (11%) Strand=Plus/Minus Query 3937 TTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCA 3996 ||| |||||||| ||||||| |||||||||| |||||||||||||| |||| ||| Sbjct 5633098 TTTTTGCCCTCCGGGCGGAAAGTTGCAACTTTCGTCCCGCTGCGCTAAACAAAGTGGCCG 5633039 Query 3997 CATTCCGGCTACGTCGGGTAGA-AAAATAGTGTACATACCTCGGCCAG-AAAAAAGTAAA 4054 | ||||| || ||||| | | |||||||| |||| ||| || || ||||||||||| Sbjct 5633038 CTTTCCGTCTTTGTCGGACAAATAAAATAGTATACAGCCCTTGGAAAGTAAAAAAGTAAA 5632979 Query 4055 GCCTCAGACCACATGT--TTGTTTGGNNNNNNNNNNNNNNNNNNNNNTCGGCCAACAGTT 4112 ||||||||||||||| ||| |||| ||| ||||||| Sbjct 5632978 -CCTCAGACCACATGTAATTG-TTGGCCGA-------------------GGCGAACAGTT 5632940 Query 4113 ACATGTGATCTGAGACTTTTGTTATTTTTCTGGCCTACGTATGTAATAT-ACTATTCTT 4170 |||||||||||||| ||||| ||||||| || || | | ||| |||| |||||| || Sbjct 5632939 ACATGTGATCTGAGGCTTTTCTTATTTTCCTTCCCAAGGGTTGTTATATAACTATTATT 5632881 >seq501 Length=726203 Score = 122 bits (134), Expect = 3e-24 Identities = 116/145 (80%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 3934 TGTTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTG 3993 |||||| | ||||||| ||||||| ||||||||| | |||||||||||||| |||||| Sbjct 386291 TGTTTTTTCCCCTCCAGGCGGAAAGTGGCAACTTTGGTCCCGCTGCGCTAAACAAAGTTG 386232 Query 3994 CCACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAG-AAAAAAGTA 4052 || | ||||| || ||||| | ||||||||| |||| ||| || | ||||||||| Sbjct 386231 CCGCTTTCCGCCTTTGTCGGACAAAAAAATAGTATACAGCCCTTGGAATGTAAAAAAGTA 386172 Query 4053 AAGCCTCAGACCACATGT--TTGTT 4075 || ||||||| ||||||| ||||| Sbjct 386171 AA-CCTCAGATCACATGTAATTGTT 386148 Score = 96.9 bits (106), Expect = 1e-16 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 3952 CGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTC 4011 ||||||| ||||||||||| |||||||||||||| |||||||| | ||||| || ||| Sbjct 391407 CGGAAAGTGGCAACTTTCGTCCCGCTGCGCTAAACAAAGTTGCCGCTTTCCGCCTTTGTC 391348 Query 4012 GGGTAGAAAAATAGTGTACATACCTCG-GCCAGAAAAAAGTAAAGCCTCAGACCACATGT 4070 || | ||||||||| |||| ||| | | || |||||||| ||||||| |||||| Sbjct 391347 GGACAAAAAAATAGTATACAGCCCTTGAAAAATAATAAAGTAAA-CCTCAGATTACATGT 391289 >seq426 Length=3277875 Score = 122 bits (134), Expect = 3e-24 Identities = 116/143 (81%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 3930 AACT-TGTTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGA 3988 |||| |||||| | |||||| ||||||| ||||||||||| |||||||||||| | | Sbjct 3026535 AACTATGTTTT-TCCCCTCCGGGCGGAAAGTGGCAACTTTCGTCCCGCTGCGCTAAGCAA 3026477 Query 3989 AGTTGCCACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAG-AAAA 4047 ||||||| | ||||| || |||||| | ||||||||| |||| ||| || || |||| Sbjct 3026476 AGTTGCCGCTTTCCGCCTTTGTCGGGCAAAAAAATAGTATACAGCCCTTGGAAAGTAAAA 3026417 Query 4048 AAGTAAAGCCTCAGACCACATGT 4070 ||||||| ||||||| ||||||| Sbjct 3026416 AAGTAAA-CCTCAGATCACATGT 3026395 >seq477 Length=1426125 Score = 120 bits (132), Expect = 1e-23 Identities = 169/240 (70%), Gaps = 12/240 (5%) Strand=Plus/Plus Query 3929 TAACTTGTTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGA 3988 ||||| ||||| | |||||| ||||||| ||||||||||| |||||||||||||| | Sbjct 626262 TAACTAGTTTT-TCCCCTCCGGGCGGAAAGTGGCAACTTTCGTCCCGCTGCGCTAAACAA 626320 Query 3989 AGTTGCCACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAG-AAAA 4047 ||||||| | |||| || || || | ||||||||| |||| ||| | || |||| Sbjct 626321 AGTTGCCGCTTTCCACCTTTGTTGGACAAAAAAATAGTATACAGCCCTTGAAAAGTAAAA 626380 Query 4048 AAGTAAAGCCTCAGACCACATGTTTGTTTGGNNNNNNNNNNNNNNNNNNNNNTCGGCCAA 4107 ||||||| | ||||| ||||||||||| | ||||| Sbjct 626381 AAGTAAA-CGTCAGATCACATGTTTGT---------CGATCTCGGGTTCGCCTAAGCCAA 626430 Query 4108 CAGTTACATGTGATCTGAGACTTTTGTTATTTTTCTGGCCTACGTATGTAATATACTATT 4167 || ||||||| ||| |||| ||||| ||||||| || || | | ||||||| |||||| Sbjct 626431 CAATTACATGGGATTTGAGGCTTTTATTATTTTCCTTCCCAAGGGGTGTAATACACTATT 626490 >seq2321 Length=322 Score = 118 bits (130), Expect = 4e-23 Identities = 116/145 (80%), Gaps = 5/145 (3%) Strand=Plus/Minus Query 3934 TGTTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTG 3993 |||||| | ||||||| ||||||| ||||||||| || || ||||||||||| |||||| Sbjct 229 TGTTTTTTCCCCTCCAGGCGGAAAGTGGCAACTTT-GGTCCCCTGCGCTAAACAAAGTTG 171 Query 3994 CCACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAG-AAAAAAGTA 4052 || | ||||| || ||||| | ||||||||| |||| ||| || | ||||||||| Sbjct 170 CCGCTTTCCGCCTTTGTCGGACAAAAAAATAGTATACAGCCCTTGGAATGTAAAAAAGTA 111 Query 4053 AAGCCTCAGACCACATGT--TTGTT 4075 || ||||||| ||||||| ||||| Sbjct 110 AA-CCTCAGATCACATGTAATTGTT 87 >seq421 Length=3876397 Score = 113 bits (124), Expect = 2e-21 Identities = 113/143 (79%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||||| |||||| |||||| || |||||| | |||||||||||||| |||||||| Sbjct 2751979 TTTTCTCCCCTCCGGGCGGAAAATGGTAACTTTTGTCCCGCTGCGCTAAACAAAGTTGCC 2751920 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAG-AAAAAAGTAAA 4054 | ||||| || ||||| | ||||||||| |||| ||| || || ||||||||||| Sbjct 2751919 GCTTTCCGCCTTTGTCGGACAAAAAAATAGTATACAACCCTTGGAAAGTAAAAAAGTAAA 2751860 Query 4055 GCCTCAGACCACATGT--TTGTT 4075 ||||||| ||||||| ||||| Sbjct 2751859 -CCTCAGATCACATGTAATTGTT 2751838 >seq758 Length=5904300 Score = 111 bits (122), Expect = 6e-21 Identities = 114/145 (79%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 3928 ATAACTTGTTTTCTGCCC-TCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAAC 3986 |||| || |||||||||| ||| ||||||| ||||||||||| |||||| |||||| Sbjct 3533755 ATAAATTATTTTCTGCCCCTCCGGGCGGAAAGTGGCAACTTTCGTCCCGCTGTGCTAAAT 3533696 Query 3987 GAAGTTGCCACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAG-AA 4045 ||| |||||| ||||| || ||||| | ||||||||| |||| ||| || || || Sbjct 3533695 AAAGCTGCCACTTTCCGCCTTTGTCGGACAAAAAAATAGTATACAGCCCTTGGAAAGTAA 3533636 Query 4046 AAAAGTAAAGCCTCAGACCACATGT 4070 || |||||| ||||||| | ||||| Sbjct 3533635 AACAGTAAA-CCTCAGATCGCATGT 3533612 >seq454 Length=2006566 Score = 104 bits (114), Expect = 8e-19 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 3933 TTGTTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTT 3992 || |||| | | |||| |||||| ||||||||||| || ||||||||| | | ||| Sbjct 13471 TTATTTTTTCCGCTCCGGGCGGAAACTGGCAACTTTCGTCCCACTGCGCTAAGCAACGTT 13530 Query 3993 GCCACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAG-AAAAAAGT 4051 ||| | ||||| || |||||| | ||||||||| |||| ||| | || |||||||| Sbjct 13531 GCCGCTTTCCGCCTTCGTCGGACAAAAAAATAGTATACAGCCCTTAGAAAGTAAAAAAGT 13590 Query 4052 AAAGCCTCAGACCACATGTTT 4072 ||| ||||||| ||||||||| Sbjct 13591 AAA-CCTCAGATCACATGTTT 13610 >seq418 Length=4352778 Score = 102 bits (112), Expect = 3e-18 Identities = 110/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||| | |||||| |||||| |||| |||||| |||||||||||||| |||||||| Sbjct 2397588 TTTTTTCCCCTCCGAGCGGAAAATGGCACCTTTCGTCCCGCTGCGCTAAACAAAGTTGCC 2397529 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAG 4055 | || || || ||||| | |||||| || |||| ||| || || |||||||||| Sbjct 2397528 GCTTTGCGCCTTTGTCGGACA-AAAAATTGTATACAGCCCTTGGAAAGTAAAAAGTAAA- 2397471 Query 4056 CCTCAGACCACATGT--TTGTT 4075 ||||||| ||||||| ||||| Sbjct 2397470 CCTCAGATCACATGTAATTGTT 2397449 >seq765 Length=4930657 Score = 98.7 bits (108), Expect = 3e-17 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||| | ||||| ||||||| ||||||| ||| |||||||||||||| |||||||| Sbjct 990385 TTTTTTCCCCTCAGGGCGGAAAGTGGCAACTCTCGTCCCGCTGCGCTAAACAAAGTTGCC 990444 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAG-AAAAAAGTAAA 4054 | ||||| ||||| | || |||||| |||| ||| || || |||||||| || Sbjct 990445 GCTTTCCGCGATTGTCGGACAAAATAATAGTATACAGCCCTTGGAAAGTAAAAAAGT-AA 990503 Query 4055 GCCTCAGACCACATGT 4070 |||||||| ||||||| Sbjct 990504 GCCTCAGATCACATGT 990519 >seq419 Length=4206046 Score = 98.7 bits (108), Expect = 3e-17 Identities = 105/136 (77%), Gaps = 7/136 (5%) Strand=Plus/Minus Query 3943 CCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCC 4002 |||||| ||||||| ||||||||||| ||||||||||||| |||||||| | |||| Sbjct 3131716 CCCTCCTGGCGGAAAGTGGCAACTTTCGTCTCGCTGCGCTAAACAAAGTTGCCGCTTTCC 3131657 Query 4003 GGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAG-AAAAAAGTAAAGCCTCAG 4061 | || ||||| | ||||||| |||| ||| || || ||||||||||| ||| Sbjct 3131656 GCCTTTGTCGGACAAAAAAATA--GTACCGTCCTTGGAAAGTAAAAAAGTAAA----CAG 3131603 Query 4062 ACCACATGTTTGTTTG 4077 | ||||||||||| || Sbjct 3131602 ATCACATGTTTGTGTG 3131587 >seq767 Length=4962828 Score = 93.3 bits (102), Expect = 1e-15 Identities = 99/127 (78%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 3952 CGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTC 4011 ||||||| || | |||||| ||||||||||||| |||||||| | ||||| | ||| Sbjct 1208477 CGGAAAGTGGTATCTTTCGTCACGCTGCGCTAAACAAAGTTGCCGCTTTCCGCTTTTGTC 1208418 Query 4012 GGGTAGAAAAATAGTGTACATACCTCGGCCAG-AAAAAAGTAAAGCCTCAGACCACATGT 4070 || | ||||||||| |||| || || || ||||||||||| ||||||| ||||||| Sbjct 1208417 GGACAAAAAAATAGTATACAGCTCTGGGAAAGTAAAAAAGTAAA-CCTCAGATCACATGT 1208359 Query 4071 --TTGTT 4075 ||||| Sbjct 1208358 AATTGTT 1208352 >seq754 Length=6760189 Score = 91.5 bits (100), Expect = 5e-15 Identities = 93/120 (78%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||| | |||||| ||||||| ||||||||||| |||||||||||| |||||||| Sbjct 3023914 TTTTTTCCCCTCCGGTCGGAAAGTGGCAACTTTCGTCACGCTGCGCTAAATAAAGTTGCC 3023855 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAG-AAAAAAGTAAA 4054 | ||||| || ||||| | ||||||||| ||| ||| || || ||||||||||| Sbjct 3023854 GCTTTCCGCCTTTGTCGGACAAAAAAATAGTAAACAGCCCTTGGAAAGTAAAAAAGTAAA 3023795 >seq490 Length=1018582 Score = 91.5 bits (100), Expect = 5e-15 Identities = 88/112 (79%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 3928 ATAACTTGTTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACG 3987 |||| || |||| | || ||| ||||||| ||||||||||| |||||||||||||| Sbjct 747096 ATAATTTTTTTTTTTCC-TCCGGGCGGAAAGTGGCAACTTTCGTCCCGCTGCGCTAAACA 747038 Query 3988 AAGTTGCCACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGG 4039 |||||||| | ||||| || ||||| | ||||||||| |||| ||| || Sbjct 747037 AAGTTGCCGCTTTCCGCCTTTGTCGGACAAAAAAATAGTATACAGCCCTTGG 746986 >seq745 Length=8683647 Score = 89.7 bits (98), Expect = 2e-14 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 3937 TTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCA 3996 ||| | |||||| ||||||| ||||| || || |||||||||||| | |||||||| Sbjct 1704788 TTTTTTCCCTCCGGGCGGAAAGTGGCAATTTACGTCCCGCTGCGCTAAGCAAAGTTGCCG 1704847 Query 3997 CATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAG-AAAAAAGTAAA 4054 | | ||| || ||||| | ||||||||| |||| ||| ||| || ||||||||||| Sbjct 1704848 CTTCCCGCCTTTGTCGGACAAAAAAATAGTATACAGCCCTTGGCAAGTAAAAAAGTAAA 1704906 >seq420 Length=4008358 Score = 86.0 bits (94), Expect = 2e-13 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 3933 TTGTTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTT 3992 ||||||| | || || ||||||| ||||||||||| |||||||||||||| ||||| Sbjct 2526393 TTGTTTTTTCCCGTCTGGGCGGAAAGTGGCAACTTTCGTCCCGCTGCGCTAAACAAAGTT 2526334 Query 3993 GCCACATTCCGGCTACGTCGGGTAGAAAAATAG-TGTACATACCTCGGCCAG-AAAAAAG 4050 ||| | || | | ||||| | || |||| | |||| ||| || || ||||||| Sbjct 2526333 GCCGCTTTGCACATTTGTCGGACAAAAGGATAGTTATACAGCCCTTGGAAAGTAAAAAAG 2526274 Query 4051 TAAAGCCTCAGACCACAT 4068 |||| ||||||| ||||| Sbjct 2526273 TAAA-CCTCAGATCACAT 2526257 >seq415 Length=4426693 Score = 86.0 bits (94), Expect = 2e-13 Identities = 108/145 (74%), Gaps = 5/145 (3%) Strand=Plus/Minus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||| | |||||| ||||||| |||||||||| ||||||||||||| ||| | Sbjct 3822960 TTTTTTCCCCTCCGGGCGGAAAGTTGCAACTTTCGTCCCGCTGCGCTAAATAAAGGCTCT 3822901 Query 3996 ACATTCCGGCTACGTCGG-GTAGAAAAATAGTGTACATACCTCGGCCAG--AAAAAAGTA 4052 | ||||| || ||||| | ||||||||| |||| ||| || || ||| ||| | Sbjct 3822900 GCTTTCCGCCTTTGTCGGACAAAAAAAATAGTATACAGCCCTTGGGAAGGAAAATAAGAA 3822841 Query 4053 AAGCCTCAGACCACATGT--TTGTT 4075 |||||||||| ||||||| ||||| Sbjct 3822840 AAGCCTCAGATCACATGTAATTGTT 3822816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17575640978525