Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq483 100 5e-16 >seq483 Length=1310704 Score = 100 bits (110), Expect = 5e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 ||||| || || | ||||| | ||||| | |||||||| || || ||||| || | Sbjct 173270 CTGTTTAATGCGGTTGAGACTCTTCCCTGTGTAAAGAAGAAAGCAGATTGGGCTCTACAG 173329 Query 42669 TGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 ||||| | || | ||| ||||| || || || ||| | || |||||| | || || || Sbjct 173330 TGGATTGCAAG-CAAGACTGCAACATTTGGTGAAAGGATTGTTGCCTTTGCAGCTGTAGA 173388 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGAT 42787 || ||||| ||||| ||| || || ||||||||||||||||| || || || Sbjct 173389 AGGAATCTTTTTCTCAGGCAGTTTTGCTTCCATCTTCTGGCTCAAAAAGCGGGGCCTTAT 173448 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||| ||||| || ||| || ||||| || |||||| |||| Sbjct 173449 GCCGGGACTTACATTCAGTAATGAACTTATTTCCAGGGATGAGG 173492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943826152316880