Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq38992 152 4e-32 seq37024 152 4e-32 seq1359 152 4e-32 seq1947 145 6e-30 seq500 89.7 4e-13 seq747 84.2 2e-11 seq762 82.4 6e-11 >seq38992 Length=891 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 371 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 430 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||||||||||||||||||||||| ||||||| ||||| Sbjct 431 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 468 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 371 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 430 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||||||||||||||||||||||| ||||||| ||||| Sbjct 431 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 468 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 114145 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 114195 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 309 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 360 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 115342 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 115392 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 309 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 360 >seq37024 Length=808 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 204 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 263 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||||||||||||||||||||||| ||||||| ||||| Sbjct 264 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 301 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 204 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 263 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||||||||||||||||||||||| ||||||| ||||| Sbjct 264 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 301 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 114145 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 114195 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 142 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 193 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 115342 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 115392 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 142 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 193 >seq1359 Length=9234 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 5432 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 5373 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||||||||||||||||||||||| ||||||| ||||| Sbjct 5372 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 5335 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 5432 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 5373 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||||||||||||||||||||||| ||||||| ||||| Sbjct 5372 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 5335 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 115342 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 115392 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 5494 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 5443 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 114145 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 114195 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 5494 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 5443 >seq1947 Length=220 Score = 145 bits (160), Expect = 6e-30 Identities = 92/97 (95%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 115532 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACCA 115589 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 218 ATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGACCCA 159 Query 115590 AAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||||||||||||||||||||||| ||||||| ||||| Sbjct 158 AAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 122 Score = 145 bits (160), Expect = 6e-30 Identities = 92/97 (95%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 114335 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACCA 114392 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 218 ATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGACCCA 159 Query 114393 AAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||||||||||||||||||||||| ||||||| ||||| Sbjct 158 AAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 122 >seq500 Length=704489 Score = 89.7 bits (98), Expect = 4e-13 Identities = 62/68 (91%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| ||||||||| |||||| | |||||| ||||||||||||| ||||||||||| Sbjct 96399 CATGTATTAGCTCTAGAACTACCACAGCTATCCAGGTAACTGAGTAAGGTCTAAGGAACC 96458 Query 114392 AAAACTGA 114399 |||||||| Sbjct 96459 AAAACTGA 96466 Score = 89.7 bits (98), Expect = 4e-13 Identities = 62/68 (91%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| ||||||||| |||||| | |||||| ||||||||||||| ||||||||||| Sbjct 96399 CATGTATTAGCTCTAGAACTACCACAGCTATCCAGGTAACTGAGTAAGGTCTAAGGAACC 96458 Query 115589 AAAACTGA 115596 |||||||| Sbjct 96459 AAAACTGA 96466 >seq747 Length=8313734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || || | ||||| ||| || || || ||||| |||||||| || | Sbjct 5399266 CCACCTCTGAGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5399325 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| || | || || | || ||||| ||||| |||| ||||||||||| || Sbjct 5399326 AATGTACGGCCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGA 5399385 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTCG 34077 | | |||||||||| | | | || |||| | | || || | |||| | ||| Sbjct 5399386 ATTCCCTCTTTGTCC-TGAATCTTGGCTT--TCACATTCTCAATGGTGTCAGATGCTTCA 5399442 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || ||||| ||||| ||||||||||||||||| |||||| Sbjct 5399443 ACTTCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5399493 >seq762 Length=5301712 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10212 CACATAGGCGCAGCGACTAAACCAAAACGCGTGTTGTTCCCACGCCACATCGTCATCTTG 10271 ||| || |||||||| ||||| ||||| |||||||||| || || || || Sbjct 754362 CACGTACGCGCAGCGGTCGAACCATCTGGCGTGCTGTTCCCACGGAACGTCATCGCTTTC 754303 Query 10272 CCAATGATTTAATCCGCCGTTGCAATGAAAACATTTAGTCTTATCACCCTCGCCCACATA 10331 ||||| |||| || |||| ||||| || ||||| || || ||||| | ||| ||| Sbjct 754302 CCAATCTTTTAGCCCTCCGTCGCAATAGAAGCATTTCGTTTTGTCACCTTGGCCTGTATA 754243 Query 10332 ATAAAATCCCGCATCTGCTAGTTCCTCGGGCTT 10364 | ||||| || ||||| ||||||||||| || Sbjct 754242 GAAGAATCCGGCCTCTGCCAGTTCCTCGGGTTT 754210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396852073937326