Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq747 149 1e-30 seq466 149 1e-30 seq5054 123 6e-23 >seq747 Length=8313734 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| ||||| | | |||||||||||||| | || || || || || Sbjct 4903635 TTCCTTTTGAATATTGTAGTCTGACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAA 4903576 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| |||||||||||| | || ||||||||||| || ||||| ||||| |||||||| Sbjct 4903575 GATGAGACGCTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATCTTCGCCTTCACGTT 4903516 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || | ||||||||| | ||||| ||||| ||||||||||| || || Sbjct 4903515 CTCGATTGTGTCCGAAGCTTCTACTTCCAAAGTGATGGTCTTTCCGGTCAGAGTTTTCAC 4903456 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 4903455 GAAGATCTGCAT 4903444 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | ||||| ||||| | ||| ||||||||| || || |||| Sbjct 4903446 CATG-CCTCCACGAAGACGCAGTACAAGATGGAGTGTGGATTCTTTTTGAATGTTGTAGT 4903388 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | | |||||||||||||| | || || || || ||||| |||||||||||| | Sbjct 4903387 CTGACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAG 4903328 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || ||||||||||| || ||||| ||||| ||||| || || || | || | | Sbjct 4903327 GAGGAATTCCTTCTTTGTCTTGGATCTTCGCCTTCACATTCTCAATTGTGTCCGAAGGCT 4903268 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| | ||||| ||||| ||||| ||||| || || || |||||||| Sbjct 4903267 CCACTTCTAAAGTGATGGTCTTGCCGGTTAGAGTTTTCACAAAGATCTGCAT 4903216 Score = 118 bits (130), Expect = 2e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || ||||| | || | ||| | || |||||| ||||| || |||| Sbjct 5397210 CATG-CCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGT 5397268 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || || |||||||| | ||||| ||||| ||||||| ||||| ||| Sbjct 5397269 CAGATAGTGTACGGCCGTCTTCAAGCTGTTTGCCTGCAAAGATCAATCGCTGCTGATCCG 5397328 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || ||||| ||||||||||| || || |||||||| ||||| || | || | || Sbjct 5397329 GAGGAATTCCCTCTTTATCCTGAATCTTGGCTTTCACATTTTCAATGGTGTCAGATGCTT 5397388 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| | ||||| || || ||||| || || || || || || ||||| Sbjct 5397389 CAACTTCTAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAAATTTGCAT 5397440 Score = 118 bits (130), Expect = 2e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| ||||| || |||| | || ||||||||||| | |||||| || ||||| Sbjct 5399529 TTCTTTTTGAATATTGTAATCGGATAATGTCCGTCCGTCTTCAAGTTGTTTCCCAGCGAA 5399588 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||||| || |||| || || || ||||| || || ||||| ||||| || Sbjct 5399589 AATCAGTCGCTGCTG---ATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTTAC 5399645 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||||| | ||| | ||| ||||| | || || || || || || ||||| || Sbjct 5399646 ATTTTCTATGGTGTCGGATGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAGTTTT 5399705 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 5399706 TACAAAAATCTGCAT 5399720 >seq466 Length=1632705 Score = 149 bits (164), Expect = 1e-30 Identities = 170/227 (75%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| | || || |||| ||| |||||| ||||| |||||||| | || ||||| Sbjct 1583292 AGTCTCAAAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTGAAAGAGTGCGG 1583351 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCT 288372 || |||||||||||||| || || ||||| ||||| ||||| ||| || || ||| Sbjct 1583352 CCATCTTCTAATTGTTTCCCGGCAAAGATGAGACGTTGTTG---GTCTGGAGGAATACCT 1583408 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || || || |||||||| ||||| || ||||| |||| ||| | ||| || || | Sbjct 1583409 TCCTTGTCTTGGATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTCCACCTCCAAT 1583468 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTT 288479 || || |||||||| || || || ||||||||||| |||||| |||| Sbjct 1583469 GTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATTTGCATTGTGTT 1583515 >seq5054 Length=501 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || ||||| ||||| | | ||||| || ||||| ||||| || || ||||| Sbjct 399 TTCTTTCTGAATATTGTAGTCTGATAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCGAA 340 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | |||||| ||||| || ||||| || ||||||||||| ||||| || Sbjct 339 GATCAGTCTCTGTTGG---TCTGGAGGAATGCCTTCCTTGTCCTGGATTTTTGCTTTGAC 283 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||| | ||| || || || ||||| ||||| || || ||||| || Sbjct 282 ATTTTCAATTGTATCTGAAGCTTCAACCTCAAGGGTGATTGTCTTGCCAGTTAGAGTTTT 223 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 222 TACAAAGATCTGCAT 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178997486222914