Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq472 235 5e-57 seq747 129 6e-25 seq466 96.9 3e-15 seq5054 93.3 4e-14 seq8861 86.0 6e-12 >seq472 Length=1464009 Score = 235 bits (260), Expect = 5e-57 Identities = 365/517 (71%), Gaps = 7/517 (1%) Strand=Plus/Plus Query 27991 CGAGAAAATTG-TGGCCGCCTATTTCGTCGAGTGGGGCGTGTATCTGCGGCAGTTTCCCG 28049 || ||||| || ||| ||| || |||||||| ||||| ||||||| | |||| || | Sbjct 407329 CGGGAAAAGTGGTGGGCGCTTACTTCGTCGAATGGGGTGTGTATCCTAGAAAGTTCCCTG 407388 Query 28050 TCGACAAAGTGCCCGCGCCCAACCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATGCG 28109 | ||| || || | || |||||| | || ||||| ||||| ||| | ||||| || | Sbjct 407389 TGGACCGCGTTCCGGTTCCGAACCTGACTCATTTGCTCTACGGCTTCATTCCGATTTGTG 407448 Query 28110 GCGGCGACGGCATAAACGACGCCCTCAAGACCGTTCCCGGCAGTTTCGAGGCGCTGCAGC 28169 | || || ||||| || ||| | || || |||||||| | || || || | Sbjct 407449 GTGGTGATGGCATCAATGACAGTTTGAAAGAAATTGAGGGCAGTTTTCAAGCACTACAAC 407508 Query 28170 GCTCGTGCGCCGGGCGCGCCGACTTCAAGGTGACGATCCACGATCCCTGGGCCGCCATTC 28229 | || ||| ||| || | ||||||||||| | ||||||||||||||||| ||| | | Sbjct 407509 GTTCATGCAGCGGCCGTGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGC 407568 Query 28230 AGAAGCCGCAAAAGGGCGTCTCTACGTGGAACGAGCCGTACAAAGGCAACTTTGGGCAAT 28289 |||| || |||||||| | || | ||||||||||| |||||||| ||||| ||||| Sbjct 407569 AGAAACCTCAAAAGGGATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGC 407628 Query 28290 TGATGAGCGTCAAATTAGCCAATCCGCACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGA 28349 ||||| | ||| ||| ||| | ||| ||||| | | || || || ||||||| Sbjct 407629 TGATGCAGTTGAAACAAGCGAATACTGGCTTAAAGGTCTTACCTTCAATTGGTGGCTGGA 407688 Query 28350 CGCTGTCGGACCCATTCTTTCACATGCACGACGCGACCGTGCGCCAAACGTTCATCGATT 28409 | || | || || ||||| | | |||| ||| ||| | |||| ||| | Sbjct 407689 CATTGGCCGATCCCTTCTTCTTCTTCACCGACAAAACCAAGCG-TGATCGTT--TCGTTG 407745 Query 28410 CCGTCGTG---GACTTTCTGCTGACCTGGAAGTTCTTCGACGGCGTCGACATCGATTGGG 28466 || |||| ||||| || | || |||||||||||||| || |||||||| ||||||| Sbjct 407746 CCTCCGTGAAAGACTTCCTCCAAACTTGGAAGTTCTTCGATGGTGTCGACATTGATTGGG 407805 Query 28467 AGTTTCCGGGCGGCAAAGGAGCCAATCCCGATGTCGG 28503 |||| || || |||||||| || || || ||| |||| Sbjct 407806 AGTTCCCAGGTGGCAAAGGCGCTAACCCTGATCTCGG 407842 >seq747 Length=8313734 Score = 129 bits (142), Expect = 6e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| || || ||||| | | || || |||||||| ||||| ||| Sbjct 5399494 CCACCTCTCAGACGTAATACCAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCGGAT 5399553 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || |||||||| || | | || || ||||| || || ||||| Sbjct 5399554 AATGTCCGTCCGTCTTCAAGTTGTTTCCCAGCGAAAATCAGTCGCTGCTGATCTGGAGGA 5399613 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| |||||| ||||| | ||| | |||||||| | || || Sbjct 5399614 ATGCCCTCTTTGTCT-TGAATTTTTGCTTTTACATTTTCTATGGTGTCGGATGCTTCGAC 5399672 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 || | || | ||||||||||| ||||||||||||||||||||||||| Sbjct 5399673 TTCTAATGTTATGGTTTTACCAGTGAGAGTTTTTACAAAAATCTGCATGG 5399722 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| || |||||||| | | || ||||||||||| |||||||| | Sbjct 4903670 CCTCCTCGTAGACGTAACACTAAATGGAGTGTAGATTCCTTTTGAATATTGTAGTCTGAC 4903611 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || || || || | | |||| ||||||||||| || ||||| Sbjct 4903610 AAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGA 4903551 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| || || | | || | ||||| | | || || Sbjct 4903550 ATTCCTTCTTTGTCTTGGATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCTACT 4903491 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | || || || ||||||||||| || || ||||||||| || Sbjct 4903490 TCCAAAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAGATCTGCATGCCT 4903440 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || | ||| | | || || ||||||||||||||||| Sbjct 4903443 GCCTCCACGAAGACGCAGTACAAGATGGAGTGTGGATTCTTTTTGAATGTTGTAGTCTGA 4903384 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| || || || || || | | |||| ||||||||||| || ||||| Sbjct 4903383 CAAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGG 4903324 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || || | | || | ||||| | | |||||| Sbjct 4903323 AATTCCTTCTTTGTCTTGGATCTTCGCCTTCACATTCTCAATTGTGTCCGAAGGCTCCAC 4903264 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | || || || || |||||||| ||||| ||||||||| || Sbjct 4903263 TTCTAAAGTGATGGTCTTGCCGGTTAGAGTTTTCACAAAGATCTGCATGCCT 4903212 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 |||||| ||||||| | || || || || ||||||||||| | ||||| || Sbjct 5397000 CAAAACCAAATGTAAAGTAGATTCTTTCTGGATGTTGTAGTCAGATAGTGTACGGCCATC 5397059 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || ||||| || | | |||| | ||||| || |||||||| || || |||||||| Sbjct 5397060 TTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCCGGAGGAATTCCCTCTTTGTC 5397119 Query 138522 GGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 ||| | || | ||| | | ||| | |||||| | | || || || | || | | Sbjct 5397120 -CTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGTGATGG 5397178 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||||| || || ||||| ||||| ||||||||| Sbjct 5397179 TTTTACCGGTAAGTGTTTTGACAAAGATCTGCATG 5397213 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| | |||||| ||||| | | || || || || ||||||||||| Sbjct 5397213 GCCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGA 5397272 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||| || || ||||| || | | |||| | ||||| || |||||||| Sbjct 5397273 TAGTGTACGGCCGTCTTCAAGCTGTTTGCCTGCAAAGATCAATCGCTGCTGATCCGGAGG 5397332 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || ||||| || ||| | || | ||| | | ||| | |||||| | | || | Sbjct 5397333 AATTCCCTCTTTATC-CTGAATCTTGGCTTTCACATTTTCAATGGTGTCAGATGCTTCAA 5397391 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || | |||||||| || || ||||| |||||||| |||||| Sbjct 5397392 CTTCTAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAAATTTGCATG 5397441 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| | |||||| || || | | || || || || |||||||||||| Sbjct 5399037 GCCACCACGCAGTCTCAAAACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCGGA 5399096 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| || || || ||||| || | | |||| | ||||| || |||||||| Sbjct 5399097 TAGTGTACGGCCATCTTCAAGCTGTTTGCCCGCAAAGATCAACCGCTGCTGATCCGGAGG 5399156 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || |||||||| ||| | |||| ||| | | || | |||||| | | || | Sbjct 5399157 AATTCCCTCTTTGTC-CTGAATCTTTGCTTTCACATTCTCAATGGTGTCAGATGCTTCAA 5399215 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || | |||||||| || || ||||| ||||| ||||||||| Sbjct 5399216 CTTCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATG 5399265 >seq466 Length=1632705 Score = 96.9 bits (106), Expect = 3e-15 Identities = 476/748 (64%), Gaps = 10/748 (1%) Strand=Plus/Plus Query 152709 GCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCGCCACGAGTAA 152768 || || || ||||| |||||||||||||| || ||||| | || ||| || || Sbjct 916854 GCTGCCGGTTTTGTTCGCAAATAATACATCCCTGTTTTTAAACCCATTTTCCATGAATAG 916913 Query 152769 TTGTGAATCGAAGTCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATTGG 152828 ||||| ||||| | |||| |||||| || ||| | |||||| ||||| Sbjct 916914 AAATGAATAGAAGTTAATTTTCCGTAGTTCGGTTCAGCAACGTGTATATTAAAAGATTGA 916973 Query 152829 CTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCATGCGTTTTGCCTTCA-T 152887 || ||||| || ||||| ||| || || ||||| | || | |||||| || | | Sbjct 916974 CTTTGATCAATAAAAGCTCCACGATCAGCAGCCATTTGTATTGTT-GTTTTGACTGAAAT 917032 Query 152888 CTCCCAGGCGGTTTTGTACAAATTT-TTAACGCTATCCGGTATACCTTCAATGTTCTGAA 152946 ||||| | || || || || | ||| || | ||||||| ||| || || || | Sbjct 917033 TTCCCAAACTGTCTTATATAAGTCCCTTATTTCTGTA-GGTATACTTTCGATATTTTGTA 917091 Query 152947 TAGAGCCCTTGT-GTGCAAAAATAGCGTTTCGTATTTCGGG--CGTGTACACGTTCAGTT 153003 |||| || || | ||| | || || ||| ||||| | || | | | || Sbjct 917092 TAGATCCATTATTGTGTATAATGAGATTTTTC-ATTTCCTCATCCCATAAATCTGC--TT 917148 Query 153004 TAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTC 153063 | | ||| | || | || || || |||||||| || || | || || |||| Sbjct 917149 CTGTCAAATCACGAAGTAAATGATGATTTACAACTTGAAATTCTCCAGATAAAACACGTC 917208 Query 153064 TCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCG 153123 | ||| | ||| |||||| || ||||| ||||| ||||| |||| || ||||| | Sbjct 917209 TTTGATAAATATTAGAAGTGAAGGGCTCAAAAGATTCATTATTTCCTAAAATCTGAGCTG 917268 Query 153124 TGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGT 153183 | | || || ||||| || ||||| | |||||| || | || ||| ||||| Sbjct 917269 TTGAGGCAGTGGGCATTGGGGCTACCAAAAGAGAATTACGAAGACCATGCTTGGCAATGT 917328 Query 153184 CGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACT 153243 || || || || ||| ||||| | | | || | |||||||| ||||||| Sbjct 917329 TTTCTTTTAAAGCAGTCCAGTCCCATAAATCTGTTGGATTTTTATTCCACATTTCGTACT 917388 Query 153244 GTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGG 153303 |||| | |||||||| || || | || | | || || || | || | Sbjct 917389 GTAATATGCCTCGACTTGCAGGGCATCCTTCGTATGTTTCATACACTCCATACTTTTCTG 917448 Query 153304 CCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGA 153363 | ||||| || || ||||| || || |||||||| || ||||| ||||||| ||| | Sbjct 917449 CTAGTTCACAACTTGCCTCTAGTGCTCCATAGTAAATAGTTTCAAATATTTGTTGATTTA 917508 Query 153364 GAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGAC 153423 |||||| || ||||| || | |||| | | ||| || || || |||| Sbjct 917509 ATTTAATAGCTTCTGGACTTTCGTAAGGTAAACGCATTAAAATAAAAGCATCAGCAAGAC 917568 Query 153424 CCTGGATACCGACGCCGATGGGTCGATG 153451 | || | ||| | || || |||| ||| Sbjct 917569 CTTGAACACCTATTCCAATAGGTCTATG 917596 >seq5054 Length=501 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | ||||| || | | | || || || ||||| |||||||| | Sbjct 434 CCTCCTCGAAGACGTAGTACTAAGTGCAGGGTAGATTCTTTCTGAATATTGTAGTC--TG 377 Query 138448 ATA--GTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 ||| || || || || | ||| || || | |||| || | ||||||||| |||| Sbjct 376 ATAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGAG 317 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | || ||||| ||||| ||||||| ||| | | ||| | || || | | || | Sbjct 316 GAATGCCTTCCTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTATCTGAAGCTTCAA 257 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| |||||||||||||| |||||||| Sbjct 256 CCTCAAGGGTGATTGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCAT 208 >seq8861 Length=554 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GC 138445 ||| || |||| | |||||| ||||| | | || || || || ||||||||||| | Sbjct 13 GCCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGA 72 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || ||||| || || || ||||| || | | | || | ||||| || || || | Sbjct 73 TAAT-GTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGG 131 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 | || || |||||||| ||| | || | ||| | | ||| | |||||| | | || Sbjct 132 GAATTCCCTCTTTGTC-CTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCA 190 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | |||||||| || || ||||| |||||||||||||| Sbjct 191 ACTTCCAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAAATCTGCAT 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495992786841360