Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq466 253 2e-62 seq747 131 2e-25 seq5054 109 5e-19 >seq466 Length=1632705 Score = 253 bits (280), Expect = 2e-62 Identities = 682/1034 (66%), Gaps = 17/1034 (2%) Strand=Plus/Minus Query 123307 TCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGG 123366 ||||| | ||||||||||| | ||| | | || || ||| ||||||| |||| | Sbjct 918192 TCTATTTGGAACCGTGGCATGCCGATATATTTGAATTCTTAGATTTAAAGAAAAACACTG 918133 Query 123367 GGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTA 123426 | |||||| ||| | || | || || || || ||| |||| ||| | || | Sbjct 918132 GAAAAGAAGAAGTACGTGCCAGGGAACTTTTTTATGCATTGTGGATACCTGATCTTTTCA 918073 Query 123427 TGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCT 123486 || | | || || | || ||||| ||| | || |||||||| || || || || | Sbjct 918072 TGAAAAGAGTTGAAAATGATGGCGTATGGACCCTTATGTGTCCTCATGATTGCCCAGGGT 918013 Query 123487 TGAGC-GACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGC 123545 | ||| ||| || || || | ||||| || || | ||| || || | Sbjct 918012 T-AGCTGACTGTTGGGGAAAAGAATTTGAATCCTTATATGAAACATATGAA----AAAGA 917958 Query 123546 AAACAGGTTAGT----CAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACA 123601 ||| || || || || || ||||| | | | | ||| || || ||| | || Sbjct 917957 AAATAGATTTGTAAAACAAGTAAGGGCACAAGTTCTTTGGAAAGCAATAATAGAAGCTCA 917898 Query 123602 AGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCA 123661 ||| || || || || || |||||| | | ||||| | || || || |||| ||||| Sbjct 917897 AGTAGAGACTGGTACTCCATACATGTTATTTAAAGATTCATGTAATAGAAAAAGTAATCA 917838 Query 123662 GAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGA 123721 || || || || || |||||||||||||| || ||| | ||||| | ||||| | Sbjct 917837 GAAAAATTTAGGTACCATAAAATGTAGTAACCTGTGCACTGAAATAGTTGAATATACATC 917778 Query 123722 TGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA---TCGTTGC-GTCG 123777 || ||| ||||||| || || || || || || || ||| || | ||| | | Sbjct 917777 TGATGATGAAGTGGCAGTATGCAACTTAGCCTCTATA-GCGCTAAATATGTTTGTTGATG 917719 Query 123778 AAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATT 123837 | ||| | | ||| || | | | ||| | || |||||| || | | |||| Sbjct 917718 ATAACAAAACATATAACTTTAAGAAATTAAAAGAAGTTACTAAAACTATAACAGAAAATT 917659 Query 123838 TGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGA 123897 |||| ||||| || ||||| |||| ||| ||| | |||||| |||||| | | Sbjct 917658 TGAATAAAATCATTGATGTAAATTATTACCCTGTTCCGGAAGCAAAAAAATCTAATCTTA 917599 Query 123898 AACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCA 123957 ||| ||||| | ||| | || ||||||| | || || || ||| | | |||| Sbjct 917598 GACATAGACCTATTGGAATAGGTGTTCAAGGTCTTGCTGATGCTTTTATTTTAATGCGTT 917539 Query 123958 TGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATT 124017 | || |||||||| ||||| | | ||| |||||| ||||| ||||| | Sbjct 917538 TACCTTACGAAAGTCCAGAAGCTATTAAATTAAATCAACAAATATTTGAAACTATTTACT 917479 Query 124018 ACGGCGCTTTGGAGGCGAGCTGCGAACTTGC-GAAAATTCACGGCGCGTACGAAAGTTAC 124076 | || || | ||||| || || ||||| || ||||| | | || | ||| |||| ||| Sbjct 917478 ATGGAGCACTAGAGGCAAGTTGTGAACTAGCAGAAAAGT-ATGGAGTGTATGAAACATAC 917420 Query 124077 GCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACA 124136 | || |||| || || ||||| || || |||||||| ||||||||| | || ||| Sbjct 917419 GAAGGATGCCCTGCAAGTCGAGGCATATTACAGTACGAAATGTGGAATAAAAATCCAACA 917360 Query 124137 AATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCG 124196 |||| |||||||||| | ||||||| || ||| | | ||| ||| | ||||| || Sbjct 917359 GATTTATGGGACTGGACTGCTTTAAAAGAAAACATTGCCAAGCATGGTCTTCGTAATTCT 917300 Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256 || ||||| || ||||| || || | || ||||| ||||||||||| || ||||| Sbjct 917299 CTTTTGGTAGCCCCAATGCCCACTGCCTCAACAGCTCAGATTTTAGGAAATAATGAATCT 917240 Query 124257 TTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTG 124316 || ||||| |||||| ||| | || |||| || ||| | || || |||||||| Sbjct 917239 TTTGAGCCCTTCACTTCTAATATTTATCAAAGACGTGTTTTATCTGGAGAATTTCAAGTT 917180 Query 124317 ATAAATCATCATTT 124330 ||||||||||||| Sbjct 917179 GTAAATCATCATTT 917166 >seq747 Length=8313734 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | || | || || | ||| || || ||||| ||||| ||||| |||||| Sbjct 5399491 ATTCCACCTCTCAGACGTAATACCAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCG 5399550 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | |||||| || ||| | |||| ||| ||||| || || Sbjct 5399551 GATAATGTCCGTCCGTCTTCAAGTTGTTTCCCAGCGAAAATCAGTCGCTGCTGATCTGGA 5399610 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| ||||| |||||||||||| ||| | ||||| ||||||||| | ||| Sbjct 5399611 GGAATGCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCTATGGTGTCGGATGCTTCG 5399670 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||||| || || ||||||||||||||||| ||||| Sbjct 5399671 ACTTCTAATGTTATGGTTTTACCAGTGAGAGTTTTTACAAAAATCTGCAT 5399720 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || ||||| || | |||||| || ||||| || ||||| || || || Sbjct 5397211 ATGCCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCA 5397270 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || || | | || || | ||||| ||||| | |||||||| ||||| |||| Sbjct 5397271 --GATAGTGTACGGCCGTCTTCAAGCTGTTTGCCTGCAAAGATCAATCGCTGCTGATCCG 5397328 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || |||||||| ||||| || ||| | ||| | |||||| || | | Sbjct 5397329 GAGGAATTCCCTCTTTATCCTGAATCTTGGCTTTCACATTTTCAATGGTGTCAGATGCTT 5397388 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | || | ||||| ||||| || ||||| |||||||||||||| Sbjct 5397389 CAACTTCTAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAAATTTGCAT 5397440 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | ||||||| ||| || || ||||||||||| ||||| || | Sbjct 4903673 ATTCCTCCTCGTAGACGTAACACTAAATGGAGTGTAGATTCCTTTTGAATATTGTAGT-- 4903616 Query 45171 CTGAC--GGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||||| ||| || |||| || || || || | || | || || || || | Sbjct 4903615 CTGACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAG 4903556 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||| |||||||| ||||| || || || | || | || | ||||| |||| Sbjct 4903555 GAGGAATTCCTTCTTTGTCTTGGATCTTCGCCTTCA-CGTTCTCGATTGTGTCCGAAGCT 4903497 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | ||| | || || ||||| |||||||| || || || ||||| Sbjct 4903496 TCTACTTCCAAAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAGATCTGCAT 4903444 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || || ||||| || || ||||| ||||| || || || || Sbjct 4903445 ATGCCTCCACGAAGACGCAGTACAAGATGGAGTGTGGATTCTTTTTGAATGTTGTAGTC- 4903387 Query 45171 CTGAC--GGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| ||| || |||| || || || || | || | || || || || | Sbjct 4903386 -TGACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAG 4903328 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| |||||||| ||||| || || || | || | ||||| |||| || Sbjct 4903327 GAGGAATTCCTTCTTTGTCTTGGATCTTCGCCTTCACATTCTCAATTGTGTCCGAAGGCT 4903268 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | ||| | || ||||||||||||||||| ||||| || ||||| Sbjct 4903267 CCACTTCTAAAGTGATGGTCTTGCCGGTTAGAGTTTTCACAAAGATCTGCAT 4903216 >seq5054 Length=501 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | |||| ||||| || ||||| || || ||||| || || Sbjct 437 ATACCTCCTCGAAGACGTAGTACTAAGTGCAGGGTAGATTCTTTCTGAATATTGTAGTCT 378 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||||||| || || ||| | |||| || || ||||| || Sbjct 377 GATAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGA 318 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || |||||| ||||| ||| | || || |||| || Sbjct 317 GGAATGCCTTCCTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTATCTGAAGCTTCA 258 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| ||||||||||||||||| || ||||| Sbjct 257 ACCTCAAGGGTGATTGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCAT 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451757632311480