Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq747 118 7e-22 seq5054 86.0 4e-12 seq8861 82.4 5e-11 >seq747 Length=8313734 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| | ||||||||| | ||| ||||||||| ||||| ||||||| Sbjct 5399494 CCACCTCTCAGACGTAATACCAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCGGAT 5399553 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| | || || | ||||||||| | ||||| | ||||||||||| | || Sbjct 5399554 AATGTCCGTCCGTCTTCAAGTTGTTTCCCAGCGAAAATCAGTCGCTGCTGATCTGGAGGA 5399613 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| |||||||| |||||| ||| | | ||| ||||| | ||| || Sbjct 5399614 ATGCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCTATGGTGTCGGATGCTTCGACT 5399673 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || || |||||||| || | ||||||||| || ||||||||| Sbjct 5399674 TCTAATGTTATGGTTTTACCAGTGAGAGTTTTTACAAAAATCTGCATG 5399721 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||||||||| | ||| | ||| ||||||||| || || || || | Sbjct 4903443 GCCTCCACGAAGACGCAGTACAAGATGGAGTGTGGATTCTTTTTGAATGTTGTAGTCTGA 4903384 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| |||| | || |||| || || || |||| || | |||||| ||||| | || Sbjct 4903383 CAAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGG 4903324 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||||||||| || || || | || | | |||||| | ||||| Sbjct 4903323 AATTCCTTCTTTGTCTTGGATCTTCGCCTTCACATTCTCAATTGTGTCCGAAGGCTCCAC 4903264 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| || || || || |||| |||||| || |||||||||||| Sbjct 4903263 TTCTAAAGTGATGGTCTTGCCGGTTAGAGTTTTCACAAAGATCTGCATG 4903215 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||| | || ||||| | || ||| ||||| ||||| || || | | Sbjct 4903670 CCTCCTCGTAGACGTAACACTAAATGGAGTGTAGATTCCTTTTGAATATTGTAGTCTGAC 4903611 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || |||| | || |||| || || || |||| || | |||||| ||||| | || Sbjct 4903610 AAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGA 4903551 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || || | || | | |||||| | ||| || Sbjct 4903550 ATTCCTTCTTTGTCTTGGATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCTACT 4903491 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||||||| || || || || || | |||||| ||||||||||||||| Sbjct 4903490 TCCAAAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAGATCTGCATG 4903443 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| | || |||||||||| ||| |||||| || || || || || | Sbjct 5397669 GCCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGA 5397728 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || || |||| || | ||||| || ||||||| || ||||||||||| | ||| Sbjct 5397729 TAATGTACGACCATCTTCAAGCTGTTTGCCAGCAAAAATCAATCGCTGCTGATCTGGGGG 5397788 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| || || ||| | | | | ||||| | ||| || Sbjct 5397789 AATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAAC 5397848 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || |||||||| || | ||||| || ||||||||||| Sbjct 5397849 TTCCAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCAT 5397896 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| | || |||||||||| ||| |||||| || || || || || | Sbjct 5398125 GCCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGA 5398184 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || || |||| || | ||||| || ||||||| || ||||||||||| | ||| Sbjct 5398185 TAATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGG 5398244 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| || || ||| | | | | ||||| | ||| || Sbjct 5398245 AATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAAC 5398304 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || |||||||| || | ||||| || ||||||||||| Sbjct 5398305 TTCCAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCAT 5398352 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| | || |||||||||| ||| |||||| || || || || || | Sbjct 5398581 GCCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGA 5398640 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || || |||| || | ||||| || ||||||| || ||||||||||| | ||| Sbjct 5398641 TAATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGG 5398700 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| || || ||| | | | | ||||| | ||| || Sbjct 5398701 AATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAAC 5398760 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || |||||||| || | ||||| || ||||||||||| Sbjct 5398761 TTCCAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCAT 5398808 >seq5054 Length=501 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||| ||||| || |||| || |||||| || ||||| || || | Sbjct 434 CCTCCTCGAAGACGTAGTACTAAGTGCAGGGTAGATTCTTTCTGAATATTGTAGTCTGAT 375 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| |||||||| || || | || || | | ||| || || | || Sbjct 374 AAGGTGCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGAGGA 315 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| |||||| ||| | | | | ||| |||| ||| || Sbjct 314 ATGCCTTCCTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTATCTGAAGCTTCAACC 255 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || ||||| || || |||| ||||||||| ||||||||||| Sbjct 254 TCAAGGGTGATTGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCAT 208 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/203 (69%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||||||| ||||||| ||| ||||| || || || || || | | Sbjct 206 CCACCACGGAGACGCAGTACTAAATGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 147 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| |||| ||||| ||||| ||| |||| || | |||||||||||| | | | Sbjct 146 AGGGTGCGTCCATCCTCCAACTGTTTGCCGGCAAAGATGAGACGCTGCTGATCTG-GAGG 88 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| ||||| ||| | || | | ||| |||| | || || Sbjct 87 ATCCCTTCCTTGTCTTGGATTTTGGCTTTCACATTCTCAATTGTATCTGAGGGCTCGACT 28 Query 39673 TCCAAAGTAATTGTTTTACCCGT 39695 || | ||||||||| || || || Sbjct 27 TCAAGAGTAATTGTCTTGCCAGT 5 >seq8861 Length=554 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | ||| || |||||||||| ||| |||||| || || || || || | Sbjct 242 CCACCTCTGAGACGTAGCACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 301 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| || | ||||| || ||||||| || ||||||||||| | ||| Sbjct 302 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGA 361 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || || ||| | | ||| ||||| | ||| || Sbjct 362 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAACT 421 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || |||||||| || | ||||| || |||||||||||| Sbjct 422 TCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATG 469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347185596477479