Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq466 140 4e-28 >seq466 Length=1632705 Score = 140 bits (154), Expect = 4e-28 Identities = 466/720 (65%), Gaps = 19/720 (3%) Strand=Plus/Minus Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337 |||||||| || | | ||||| ||||||||||| ||||| ||| | | ||||| Sbjct 917920 TGGAAAGCAATAATAGAAGCTCAAGTAGAGACTGGTACTCCATACATGTTATTTAAAGAT 917861 Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397 | ||||| ||| |||||||| || ||||| ||| || || || ||||| || Sbjct 917860 TCATGTAATAGAAAAAGTAATCAGAAAAATTTAGGTACCATAAAATGTAGTAACCTGTGC 917801 Query 112398 ACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATC 112457 || ||||| | |||| |||| | ||||| ||| || || ||| | || || || Sbjct 917800 ACTGAAATAGTTGAATATACATCTGATGATGAAGTGGCAGTATGCAACTTAGCCTCTATA 917741 Query 112458 GCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAA 112517 || || | || ||| ||| || | || |||| | | | | | ||| | | ||| Sbjct 917740 GCGCTAAATATGTTTGTTGAT---GATAACAAAACATATAACTTTAAGAAATTAAAAGAA 917684 Query 112518 GTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT 112577 ||||| |||||| | ||| |||| | || | | | |||||| ||||| |||||| ||| Sbjct 917683 GTTACTAAAACTATAACAGAAAATTTGAATAAAATCATTGATGTAAATTATTACCCTGTT 917624 Query 112578 GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTC 112637 | || ||||||||| | ||||| | || ||||| | ||||| |||||||| Sbjct 917623 CCGGAAGCAAAAAAATCTAATCTTAGACATAGACCTATTGGAATAGGTGTTCAAGGTCTT 917564 Query 112638 GCGGATG------TATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAA 112691 || |||| | || || | || | ||| | | ||| ||||| | || Sbjct 917563 GCTGATGCTTTTATTTTAATGCGTTTACCTTACGAA----AGTCC--AGAAGCTATTAAA 917510 Query 112692 ATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTG 112751 | ||| | |||||||| || || || | | || || ||||| |||| || | Sbjct 917509 TTAAATCAACAAATATTTGAAACTATTTACTATGGAGCACTAGAGGCAAGTTGTGAACTA 917450 Query 112752 GCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTT 112811 ||||| |||| |||||||| | || || | || || | ||| | | Sbjct 917449 GCAGAAAAGTATGGAGTGTATGAAACATACGAAGGATGCCCTGCAAGTCGAGGCATATTA 917390 Query 112812 CAATTTGATATGTGGGAAGGTGAGACCA--AGCTTCACTACGACTGGGACGCTCTCAAGG 112869 || | || |||| |||| | ||| || || | | |||||| ||| | || | Sbjct 917389 CAGTACGAAATGT-GGAATAAAAATCCAACAGATTTA-TGGGACTGGACTGCTTTAAAAG 917332 Query 112870 AACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCT 112929 || ||| || | ||||||||||| ||||||| | || |||||||| || |||| Sbjct 917331 AAAACATTGCCAAGCATGGTCTTCGTAATTCTCTTTTGGTAGCCCCAATGCCCACTGCCT 917272 Query 112930 CCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATC 112989 | || || || || || || |||||||||| ||||| |||| ||| | || || |||| Sbjct 917271 CAACAGCTCAGATTTTAGGAAATAATGAATCTTTTGAGCCCTTCACTTCTAATATTTATC 917212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620405158413360