Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq466 172 1e-37 seq747 154 3e-32 seq5054 152 1e-31 seq8861 107 4e-18 >seq466 Length=1632705 Score = 172 bits (190), Expect = 1e-37 Identities = 172/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||||||||| |||||||| ||||| ||||| || || || || || | |||||| Sbjct 1583288 TCTAAGTCTCAAAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTGAAAGAGT 1583347 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | || || || || ||||| || |||||||||||||||||||| || Sbjct 1583348 GCGGCCATCTTCTAATTGTTTCCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACC 1583407 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| ||||| ||||| || || || ||||| ||| |||||| || | Sbjct 1583408 TTCCTTGTCTTGGATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTCCACCTCCAA 1583467 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| ||||| || || | ||||| ||||| | ||||||| Sbjct 1583468 TGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATTTGCATT 1583510 >seq747 Length=8313734 Score = 154 bits (170), Expect = 3e-32 Identities = 158/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 || || || || || |||||||||||||| || | |||| || | || ||||| ||||| Sbjct 4903646 TGGAGTGTAGATTCCTTTTGAATATTGTAGTCTGACAAG-GTGCGTCCGTCTTCCAGCTG 4903588 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || ||||| || |||||||| |||||||||||||| || || Sbjct 4903587 CTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATCTT 4903528 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||| || ||||||||| ||| ||||| | || | |||||||| || Sbjct 4903527 CGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCTACTTCCAAAGTGATGGTCTTTCCGGT 4903468 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || |||||| ||||| | ||||| Sbjct 4903467 CAGAGTTTTCACGAAGATCTGCAT 4903444 Score = 150 bits (166), Expect = 4e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 ||||| || || ||||| ||||||||||| ||||| || | |||| || | || ||||| Sbjct 4903424 ACAAGATGGAGTGTGGATTCTTTTTGAATGTTGTAGTCTGACAAG-GTGCGTCCGTCTTC 4903366 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || || ||||| || |||||||| |||||||||||||| Sbjct 4903365 CAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATTCCTTCTTTGTCTTG 4903306 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| || |||||||| ||||||||| |||||||| | || | ||||| Sbjct 4903305 GATCTTCGCCTTCACATTCTCAATTGTGTCCGAAGGCTCCACTTCTAAAGTGATGGTCTT 4903246 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||| || || | ||||| Sbjct 4903245 GCCGGTTAGAGTTTTCACAAAGATCTGCAT 4903216 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| || |||||||||||||||||||||| | || | || ||||| || || Sbjct 5399518 TGGAGAGTAGATTCTTTTTGAATATTGTAATCGGATAATGTCCGTCCGTCTTCAAGTTGT 5399577 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || ||||| || || |||||||||||||| |||||||||||||||||| Sbjct 5399578 TTCCCAGCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTT 5399637 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || || |||||||| || ||| ||||| | || | || || || || Sbjct 5399638 GCTTTTACATTTTCTATGGTGTCGGATGCTTCGACTTCTAATGTTATGGTTTTACCAGTG 5399697 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||||||||| || | ||||| Sbjct 5399698 AGAGTTTTTACAAAAATCTGCAT 5399720 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| | ||| ||||| || ||||| || || ||||| |||| || || | Sbjct 5399047 AGTCTCAAAACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCGGATAGTGTACGG 5399106 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| || || || ||||| | || || || || |||||||| || ||| Sbjct 5399107 CCATCTTCAAGCTGTTTGCCCGCAAAGATCAACCGCTGCTGATCCGGAGGAATTCCCTCT 5399166 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| ||| || || |||||||||||||| || ||| ||||| || || Sbjct 5399167 TTGTCCTGAATCTTTGCTTTCACATTCTCAATGGTGTCAGATGCTTCAACTTCTAGTGTG 5399226 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| || || | ||||| Sbjct 5399227 ATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCAT 5399264 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| | || ||||| || ||||| || || ||||| || | || || | Sbjct 5397223 AGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAGTGTACGG 5397282 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| ||||| || ||||| ||||| | ||| || || || |||||||| || ||| Sbjct 5397283 CCGTCTTCAAGCTGTTTGCCTGCAAAGATCAATCGCTGCTGATCCGGAGGAATTCCCTCT 5397342 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || ||||| || || || || ||||||||||| || ||| ||||| | || Sbjct 5397343 TTATCCTGAATCTTGGCTTTCACATTTTCAATGGTGTCAGATGCTTCAACTTCTAATGTG 5397402 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| || || | |||||| Sbjct 5397403 ATGGTTTTACCGGTAAGTGTTTTCACAAAAATTTGCAT 5397440 Score = 114 bits (126), Expect = 3e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || | || ||||| || ||||| || || ||||| || | | || Sbjct 5399271 TCTGAGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGT 5399330 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||| || || || ||||| | ||| || || ||||| ||||| || Sbjct 5399331 ACGGCCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCC 5399390 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||| ||||| || || || |||||||||||||| || ||| ||||| || Sbjct 5399391 CTCTTTGTCCTGAATCTTGGCTTTCACATTCTCAATGGTGTCAGATGCTTCAACTTCTAG 5399450 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || || || | ||||| || || | |||||| Sbjct 5399451 TGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5399493 Score = 111 bits (122), Expect = 3e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||||||||| | || | ||| || ||||| || || ||||| || | || || | Sbjct 5396994 GAGTCTCAAAACCAAATGTAAAGTAGATTCTTTCTGGATGTTGTAGTCAGATAGTGTACG 5397053 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| ||||| || || || ||||| | ||| || || || |||||||| || || Sbjct 5397054 GCCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCCGGAGGAATTCCCTC 5397113 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||| ||||| || || || || || |||||||| || ||| ||||| | || Sbjct 5397114 TTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGT 5397173 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| || || | ||||| Sbjct 5397174 GATGGTTTTACCGGTAAGTGTTTTGACAAAGATCTGCAT 5397212 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| | || ||||| || ||||| || || ||||| || | | || | Sbjct 5397679 AGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGA 5397738 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| || || || || || | ||| || || ||||| ||||| || ||| Sbjct 5397739 CCATCTTCAAGCTGTTTGCCAGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCCCTCT 5397798 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || || || || || |||||||| || ||| ||||| | || Sbjct 5397799 TTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGTG 5397858 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||||| || || | |||||| Sbjct 5397859 ATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5397897 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| | || ||||| || ||||| || || ||||| || | | || | Sbjct 5398135 AGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGA 5398194 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| || || || || || | ||| || || ||||| ||||| || ||| Sbjct 5398195 CCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCCCTCT 5398254 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || || || || || |||||||| || ||| ||||| | || Sbjct 5398255 TTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGTG 5398314 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||||| || || | |||||| Sbjct 5398315 ATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5398353 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| | || ||||| || ||||| || || ||||| || | | || | Sbjct 5398591 AGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGA 5398650 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| || || || || || | ||| || || ||||| ||||| || ||| Sbjct 5398651 CCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCCCTCT 5398710 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || || || || || |||||||| || ||| ||||| | || Sbjct 5398711 TTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGTG 5398770 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||||| || || | |||||| Sbjct 5398771 ATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5398809 >seq5054 Length=501 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || || ||||| ||||||||||| || | | || | |||||||| | || Sbjct 411 GTGCAGGGTAGATTCTTTCTGAATATTGTAGTCTGATAAGGTGCGGCCATCTTCCAATTG 352 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| |||| ||||||||||||||||||||||| ||||| || ||||| Sbjct 351 CTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATTTT 292 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||||| || ||||| || || ||| ||| || |||||||| | ||||| || || Sbjct 291 TGCTTTGACATTTTCAATTGTATCTGAAGCTTCAACCTCAAGGGTGATTGTCTTGCCAGT 232 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||||||| || | ||||| Sbjct 231 TAGAGTTTTTACAAAGATCTGCAT 208 >seq8861 Length=554 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| | || ||||| || ||||| || || ||||| || | | || | Sbjct 23 AGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGA 82 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| || || || || || | ||| || || ||||| ||||| || ||| Sbjct 83 CCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCCCTCT 142 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || || || || || |||||||| || ||| ||||| | || Sbjct 143 TTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGTG 202 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||||| || || | |||||| Sbjct 203 ATGGTTTTACCGGTAAGTGTTTTCACAAAAATCTGCATT 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108863763328121