Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq466 563 1e-155 seq483 113 5e-20 seq470 86.0 7e-12 >seq466 Length=1632705 Score = 563 bits (624), Expect = 1e-155 Identities = 1207/1802 (67%), Gaps = 48/1802 (3%) Strand=Plus/Plus Query 46967 TTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATA 47026 |||| ||| ||||||||||| | || | ||| || | ||||||||| |||||||| Sbjct 916820 TTTGGATTTATCCACAGTAAATTGTATGGCATTGGCTGCCGGTTTTGTTCGCAAATAATA 916879 Query 47027 CATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATA 47086 ||| || || |||||||| | ||||| ||||||||| ||| ||||||||| || Sbjct 916880 CATCCCTGTTTTTAAACCCATTTTCCATGAATAGAAATGAATAGAAGTTAATTTTCCGTA 916939 Query 47087 ACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATC 47146 | ||||| | || || ||||||| ||||||||| ||||||||||| || || | ||| Sbjct 916940 GTTCGGTTCAGCAACGTGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATC 916999 Query 47147 AGCTGCCATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGT 47204 ||| ||||| | || | |||| || || ||||| ||||| ||||| | | Sbjct 917000 AGCAGCCATTTGTATTGTTGT--TTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCC 917057 Query 47205 TTAATGTCTTCTGGGAGA--TTAG-TATTTTGAATAGATCCTCCgttttctataattttg 47261 | || ||| || | | || | ||||||| |||||||| || | |||||| Sbjct 917058 CTTATTTCTGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGA 917117 Query 47262 ttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTA 47321 ||||| | ||| | ||| | | | ||| || || | | |||| |||| Sbjct 917118 TTTTTCATTTCCTCATCCCATAAATCTGCTTCTGTCAAATCACGAAGTAAATGATGATTT 917177 Query 47322 ACAATTTGAAATTCTCCAGATAGTACTCTACGGCT---ATATATATTACTTGTATATGGT 47378 |||| ||||||||||||||||| || ||| || ||| |||||| || | || Sbjct 917178 ACAACTTGAAATTCTCCAGATAAAAC---ACGTCTTTGATAAATATTAGAAGTGAAGGGC 917234 Query 47379 TCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACT 47438 || | ||||||||||||||| ||||| ||||| ||||| || || ||||| | || || Sbjct 917235 TCAAAAGATTCATTATTTCCTAAAATCTGAGCTGTTGAGGCAGTGGGCATTGGGGCTACC 917294 Query 47439 AATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAA 47498 || | ||| | | |||| || || | |||| ||||| Sbjct 917295 AAAAGAGAATTACGAAGACCATGCTTGGCAATGTTTTCTTTTAAAGCAGTCCAGTCCCAT 917354 Query 47499 AGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAA 47558 | ||||| |||| |||||| | || || || | || ||| |||| || | Sbjct 917355 AAATCTGTTGGATTTTTATTCCACATTTCGTACTGTAATATGCCTCGACTTGCAGGGCAT 917414 Query 47559 CCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCA 47618 || | ||||||| ||| || || || || |||||||||||||| || | ||| Sbjct 917415 CCTTCGTATGTTTCATACACTCCATACTTTTCTGCTAGTTCACAACTTGCCTCTAGTGCT 917474 Query 47619 CTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAA 47678 | ||| || || ||||||||||||| | |||| || | ||||||| ||| || Sbjct 917475 CCATAGTAAATAGTTTCAAATATTTGTTGATTTAATTTAATAGCTTCTGGACTTTCGTAA 917534 Query 47679 GGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTA 47738 || | || | ||| || | ||||||||||| || ||||| |||||| Sbjct 917535 GGTAAACGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCTA 917594 Query 47739 TGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTA 47798 || | |||||| | ||||| || | || || | |||| ||| || |||||| Sbjct 917595 TGTCTAAGATTAGATTTTTTTGCTTCCGGAACAGGGTAATAATTTACATCAATGATTTTA 917654 Query 47799 TTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAAC---TTG 47855 || | | || |||| ||||||| ||||| | | | ||| Sbjct 917655 TTCAAATTTTCTGTTATAGTTTTAGTAACTTCTTTTAATTTCTTAAAGTTATATGTTTTG 917714 Query 47856 TTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT-- 47913 |||| ||||||| |||| || |||||||| |||| || ||||| || || |||| Sbjct 917715 TTATCATCAACAAACATATTTAGCGCTATAGAGGCTAAGTTGCATACTGCCACTTCATCA 917774 Query 47914 TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAAT 47973 | ||| ||||||| | |||||||| || || |||| |||||| || ||||| |||| Sbjct 917775 TCAGAT--GTATATTCAACTATTTCAGTGCACAGGTTACTACATTTTATGGTACCTAAAT 917832 Query 47974 TTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTT 48033 ||| |||||| | | ||||||| || || | | ||| | || || ||||| | Sbjct 917833 TTTTCTGATTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCT 917892 Query 48034 CTATCTGAGATTCAATGATAGATTTCCAAACA------GTCCTAGCCTTTATAACAGCTC 48087 ||| |||| ||| || || | |||||||| | | ||| | | | | ||| || Sbjct 917893 CTACTTGAGCTTCTATTATTGCTTTCCAAAGAACTTGTGCCCTTACTTGTTTTACAAATC 917952 Query 48088 TAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCAT--CCCCATACAC 48145 || || || | ||| ||| | |||||| |||||||| | ||||| ||| Sbjct 917953 TA------TTTTCTTTTTCATATGTTTCATATAAGGATTCAAATTCTTTTCCCCA-ACAG 918005 Query 48146 ATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTAC 48205 | | ||||||| || || |||| ||||||||| | | ||| | ||||||||| || Sbjct 918006 -TCAGCTAACCCTGGGCAATCATGAGGACACATAAGGGTCCATACGCCATCATTTTCAAC 918064 Query 48206 TCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAAT-CCCTAGTTCTTAGTT 48264 ||| |||| || | ||| |||||||| | || ||||| || | |||| | | || || Sbjct 918065 TCTTTTCATGAAAAGATCAGGTATCCACAATGC-ATAAAAAAGTTCCCTGGCACGTACTT 918123 Query 48265 CTTCATTGCCACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGT 48323 |||| || ||| | || | ||||| | ||||| || | |||||| |||||||| ||| Sbjct 918124 CTTCTTTTCCAGTGTTTTTCTTTAAATCTAAGAAT-TCAAATATATCGGCATGCCACGGT 918182 Query 48324 TCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCA 48383 || ||||| | ||| | | || || || ||||||||||||||||| | |||||| || Sbjct 918183 TCCAAATAGACTGCAAAAGCTCCAGGGCGCTTATTACCTCCTTGATCAACATATCTAGCT 918242 Query 48384 GTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAA 48443 ||||| || ||||||| ||||||||| |||| ||||||||||| |||||| ||||| | Sbjct 918243 GTATTATTGTAAACTCGTAACATTGGTACAAGACCATTTGATACACCATTTGTTCCTGCT 918302 Query 48444 ATATAACTTCCACTAGCTCTTATATTACTAATTGAAAT----ACCTATACCACCTGCCAT 48499 |||||| | || |||| |||||| | | || || ||| || |||||||| Sbjct 918303 ATATAAGTACCTTTAGCCCTTATA----CAGTGGACATGGACACCAATTCCACCTGCAGA 918358 Query 48500 TTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTAT 48559 ||||||||| | ||||||| | || | |||||| ||||||||||| || || |||||| | Sbjct 918359 TTTAGATATCAAAGCACACTGCTTTAAGGTATCGTAAATTCCTTCAATGCTGTCATCTTT 918418 Query 48560 CATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGT 48619 ||| | ||||||||| || | ||| || | |||| | | ||||| || Sbjct 918419 CATTGCCACTAGAAAACATGATGATAGTTGGGGGCGTGGAGTTGCAGCTGAGAATAAGGT 918478 Query 48620 TGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATC 48679 ||| |||||| | || ||||||| || | || || ||||| | || | | ||| Sbjct 918479 TGGGCTGGCATGAGTGAAATATTTCTCAGAAAGTAAGTTGTATGTATTTATGGCTGCATC 918538 Query 48680 TATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAAC 48739 ||||| ||| || || || || || ||||| | ||||| |||||||| |||| | Sbjct 918539 AATATCTTCACCATGAATTCCAATTGACACTCGCATCAGCATATGTTGAGGTCGTTCAGC 918598 Query 48740 AA 48741 || Sbjct 918599 AA 918600 >seq483 Length=1310704 Score = 113 bits (124), Expect = 5e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 |||||||| ||||||| |||||| || || ||||| || || || ||||||||||| || Sbjct 166350 TACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAGCCATAGAAACATCTTGCCTCA 166291 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 || | || ||||| ||||||| || ||||| |||||||| || || ||||| | Sbjct 166290 GTGACTTGAACTTCTTGTGAAAATCTCTCAACCAAGTTTTCATTTACAATGCCATCTGAA 166231 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA 19416 || ||||| || || | ||||| || || |||||| | ||| Sbjct 166230 GCCGCAAAGAAAGCAAGGACATGCTTGATGAAATGTCTCTCA 166189 >seq470 Length=1751055 Score = 86.0 bits (94), Expect = 7e-12 Identities = 247/377 (66%), Gaps = 5/377 (1%) Strand=Plus/Minus Query 136632 TAATGACTCCTATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTA 136691 |||||||||| || || ||||| || ||| |||| |||| | || | || | | Sbjct 777268 TAATGACTCCAGTTTTGCCTATGTTAGCTGAAGCATGCAAATCAATTGAAATGGCGATGA 777209 Query 136692 AAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTC 136751 |||| | |||||| || || | | ||||| |||||||| || || | || ||| | | Sbjct 777208 AAAAATGTCCAAACGGTATGTACTCTGAAATTAAATATGATGGGGAGAGAGTTCAGATAC 777149 Query 136752 ACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATA 136811 | || || || | | ||| || ||| |||| | ||||| || | ||||| Sbjct 777148 ATAAAAAAGGTACAGAATTTAAATACTTTTCTAGAGCATTAAAACCTGTGATGGCACATA 777089 Query 136812 AAGTT-GATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTTATT 136870 |||| | |||| |||| || || | |||||||| ||| || | | | | | || Sbjct 777088 AAGTAAGCTTAT-TTAAGGAACATTTGCCTAAAGCTTTTCCTAAAGGAGAAGATATGATA 777030 Query 136871 TTAGATTCAGAAATAGTACTAGTAGATAAAAATAAT---AAACCATTACCATTTGGCAGT 136927 |||||| | ||| | | | || ||| || | || || ||||||||||| | Sbjct 777029 TTAGATGCTGAAGTTTTGATGGTGGATGTGTGTACTGGGAAGCCCTTACCATTTGGTACA 776970 Query 136928 TTGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGAT 136987 ||||| |||| ||| | |||| ||| ||| | | ||||||| ||| |||||||| Sbjct 776969 TTGGGCGTACACAAACAATCTGAATTTAAAGATGCGGAAGTATGTTTGTTTATATTTGAT 776910 Query 136988 TGTTTGTTTTTTGATGG 137004 ||| | | || | |||| Sbjct 776909 TGTCTCTATTATAATGG 776893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561803413315320