Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_019768.1 Length=41468 Score E Sequences producing significant alignments: (Bits) Value seq18029 1058 0.0 seq2164 212 2e-50 >seq18029 Length=622 Score = 1058 bits (1172), Expect = 0.0 Identities = 609/623 (98%), Gaps = 1/623 (0%) Strand=Plus/Plus Query 31023 GCTCAGGCGAGAACATCCCGGCCTGAACATGAGAAAAAACAGGGTACTCATACTCACTTC 31082 ||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 1 GCTTAGGTGAGAACATCCCTGCCTGAACATGAGAAAAAACAGG-TACTCATACTCACTTC 59 Query 31083 TAAGTGACGGCTGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAAG 31142 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 60 TAAGTGACGGCTGCATACTAACCGCTTCATACATCTCGTAGATATCTCTGGCGATTGAAG 119 Query 31143 GGCTAAATTCTTCAACGCTAACGTTGAGAATTTTTGCAAGCAATGCGGCGTTATAAGCAT 31202 |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 120 GGCTAAATTCTTCAACGCTAACTTTGAGAATTTTTGTAAGCAATGCGGCGTTATAAGCAT 179 Query 31203 TTAATGCATTGATGCCATTAAATAAAGCACCAACGCCTGACTGTCCCATCCCCATCTTGT 31262 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 180 TTAATGCATTGATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTGT 239 Query 31263 CTGCGACAGATTCCTGGGATAAGCCAAGTTCAtttttctttttttCATAAATAGCTTTAA 31322 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 240 CTGCGACAGATTCCTGGGATAAGCCAAGTTCATTTTTCTTTTTTTCATAAATTGCTTTAA 299 Query 31323 GGCGACGTGCGTCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGCGCTCATACGTT 31382 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 300 GGCGACGTGCGTCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGTGCTCATACGTT 359 Query 31383 AAATCTATCACCGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCTA 31442 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AAATCTATCACCGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCTG 419 Query 31443 GCGGTGATAATGGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAAG 31502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GCGGTGATAATGGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAAG 479 Query 31503 ATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGATCTCGGTGTATATCAAAGCG 31562 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 480 ATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGATCTCGGCGTATATCAAAGCG 539 Query 31563 CGATCAACAAGGCCATTCATGCAGGCCGAAATAtttttttAACTATAAACGCTGATGGAA 31622 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 540 CGATCAACAAGGCCCTTCATGCAGGCCGAAAGATTTTTTTAACTATAAACGCTGATGGAA 599 Query 31623 GCGTTTATGCGGAAGAGGTAAAG 31645 ||||||||||||||||||||||| Sbjct 600 GCGTTTATGCGGAAGAGGTAAAG 622 >seq2164 Length=289 Score = 212 bits (234), Expect = 2e-50 Identities = 123/127 (97%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 30899 CTAGGTTTGGATCCTGTTGGCGCGGTCATGGAATTACCTTCAACCTCAAGCCAGAATGCA 30958 || || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 4 CTTGGCTTGGAGCCTGTTGGTGCGGTCATGGAATTACCTTCAACCTCAAGCCAGAATGCA 63 Query 30959 GAATCACTGGCTTTTTTGGTTGTGCTTACCCATCTCTCCGCATCACCTTTGGTAAAGGTT 31018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 GAATCACTGGCTTTTTTGGTTGTGCTTACCCATCTCTCCGCATCACCTTTGGTAAAGGTT 123 Query 31019 CTAAGCT 31025 ||||||| Sbjct 124 CTAAGCT 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132507574460580