Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq466 174 8e-39 >seq466 Length=1632705 Score = 174 bits (192), Expect = 8e-39 Identities = 310/446 (70%), Gaps = 10/446 (2%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 |||||| | | ||| || | ||| || ||||||| ||||||||| | || || || | Sbjct 918060 TCAACTCTTTTCATGAAAAGATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGT 918119 Query 25982 ATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 | |||||||||||| ||| || || |||| ||||||||| ||||| ||||| | ||||| Sbjct 918120 ACTTCTTCTTTTCCAGTG-TTTTTCTTTAAATCTAAGAATTCAAATATATCGGCATGCCA 918178 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 ||||| ||||||| |||||| || | || || |||||||| || ||||| Sbjct 918179 CGGTTCCAAATAGACTGCAAAAGCTCCAGGGCGCTTATTACCTCCTTGATCAACATATCT 918238 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT 26160 || || | |||| ||||| |||||||| || | ||| |||| | || ||||| | Sbjct 918239 AGCTGTATTATTGTAAACTCGTAACATTGGTACAAGACCATTTGATACACCATTTGTTCC 918298 Query 26161 ATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCA 26220 || | | ||| | | || ||| ||| |||| | ||| |||||||| || | Sbjct 918299 TGCTATATAAGTACCTTTAGCCCTTATACAGTGGACATGGACACCAATTCCACCTGCAGA 918358 Query 26221 TTTTGAAATAGCTGCACAAT-CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTT 26279 ||| || || ||||| | || || |||||| ||||||||| ||||| ||| ||| Sbjct 918359 TTTAGATATCAAAGCACACTGCTTTAA-GGTATCGTAAATTCCTTCAATGCTGTCATCTT 918417 Query 26280 TCATTCCTAATAAAAAACAAGAAGATAATTGCG---AATGAGTTGTTCCTGAATTAAATA 26336 ||||| | | || |||||| || |||| ||| | |||||| |||| |||| Sbjct 918418 TCATTGCCACTAGAAAACATGATGATAGTTGGGGGCGTGGAGTTGCAGCTGA---GAATA 918474 Query 26337 ATGTCGGTGTAGCATGAGTATAATAT 26362 | || || | |||||||| ||||| Sbjct 918475 AGGTTGGGCTGGCATGAGTGAAATAT 918500 Score = 120 bits (132), Expect = 2e-22 Identities = 330/494 (67%), Gaps = 20/494 (4%) Strand=Plus/Plus Query 24684 CTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAA 24743 |||| ||||| |||| | ||||||||| || ||||| || | | ||||| || | Sbjct 916855 CTGCCGGTTTTGTTCGCAAATAATACATCCCTGTTTTTAAACCCATTTTCCATGAATAGA 916914 Query 24744 AATGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATC----GAT 24799 |||| || || |||| |||| | ||| | | || | ||| || || ||| Sbjct 916915 AATGAATAGAAGTTAATTTTCCGTAGTTCGGT---TC-AGCAACGTGTATATTAAAAGAT 916970 Query 24800 TGAGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGAT 24859 ||| ||| || |||| | | ||| ||||| | | || | ||||| | || Sbjct 916971 TGACTTTGATCAATAAAAGCTCCACGATCAGCAGCCATTTGTATTGTTGTTTTGACTGAA 917030 Query 24860 ATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGA 24919 || || || |||| || ||| || |||| || || || |||||| | |||||||| Sbjct 917031 ATTTCCCAAACTGTCTTATATAAGTCCCTTATTTCTGTAGGTATACTTTCGATATTTTGT 917090 Query 24920 ACTGATCCATT-TTCTCTC-AAT-AGATTCAATCTCATATTCGGTGTCCAAAGAT-TAAT 24975 | |||||||| || | | ||| ||||| | |||| | | ||| | || | | Sbjct 917091 ATAGATCCATTATTGTGTATAATGAGATT---TTTCATTTCCTCATCCCATAAATCTGCT 917147 Query 24976 TTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCT 25035 | | |||| ||| | || || || | ||||| | |||||||||||| ||||| | Sbjct 917148 TCTGTCAA-ATCACGAAGTAAATGATGATTTACAACTTGAAATTCTCCAGATAAAACACG 917206 Query 25036 TCTTATTGATAA--GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGA 25093 ||| ||||||| || |||||||| || |||||| |||||||||||||||| || ||| Sbjct 917207 TCT--TTGATAAATATTAGAAGTGAAGGGCTCAAAAGATTCATTATTTCCTAAAATCTGA 917264 Query 25094 GAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACA 25153 | || || || || |||||| |||| || || ||||| | | ||||| || || Sbjct 917265 GCTGTTGAGGCAGTGGGCATTGGGGCTACCAAAAGAGAATTACGAAGACCATGCTTGGCA 917324 Query 25154 ATCTCTTGTTTTAA 25167 || | || |||||| Sbjct 917325 ATGTTTTCTTTTAA 917338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252905963367725