Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq11118 143 4e-29 seq466 118 2e-21 seq747 116 5e-21 seq483 98.7 1e-15 seq5052 84.2 3e-11 >seq11118 Length=575 Score = 143 bits (158), Expect = 4e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 51422 GCAATATGCAAAATATGCGGAGAATCATTAGACATGTTTAATTTTGAAGAGGCAAATTAT 51481 |||||||| |||||||| || ||||| | || ||||||||||| | || ||||||||| Sbjct 209 GCAATATGTAAAATATGTGGTGAATCTATTGATATGTTTAATTTCGTTGAAGCAAATTAT 150 Query 51482 ATACAGTCTAAAGGCGAAATTATAATAACGTCAAATAAAGAAAATATTTTCCAATATGAT 51541 || || || | || | || || ||||| || |||||| ||||| || |||||||| Sbjct 149 ATTCAATCACATGGTTATATGATTATAACTACACCTAAAGATAATATATTTCAATATGAA 90 Query 51542 GCTTATTCTAGATTAGTTAATGCAGAATTATTTTTAACAGATATTATTAGTATATTTGAT 51601 | |||| || |||| |||||| |||||||||||| ||||| |||| | | |||| Sbjct 89 GTTTATGGTAAATTAACTAATGCTGAATTATTTTTATCAGATTATATTTCAAATTATGAT 30 Query 51602 GATATATTTGATACTAACAGAATGGATGA 51630 | ||||| ||||||| ||||||||| Sbjct 29 GCATTATTTAATACTAATTTAATGGATGA 1 >seq466 Length=1632705 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | ||||| | || || || || |||||||| || || |||| ||| Sbjct 1583509 ATGCAAATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAAGCTTCC 1583450 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| |||||| ||||| || ||||| || |||||||| ||| Sbjct 1583449 GACACTATCGAAAATGTCAAAGCTAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 1583390 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | |||||| || || | |||||| | | ||| | ||||| ||||| Sbjct 1583389 CAACGTCTCATCTTTGCCGGGAAACAATTAGAAGATGGCCGCACTCTTTCAGACTATAAC 1583330 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || ||||| | || || ||| | ||||| ||| Sbjct 1583329 ATCCAGAAAGAATCCACACTTCACCTGGTTTTGAGACTTAGAGGAGGT 1583282 >seq747 Length=8313734 Score = 116 bits (128), Expect = 5e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | ||||| ||||| || |||||||||||||||| || Sbjct 5399720 ATGCAGATTTTTGTAAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCATCC 5399661 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| ||||| ||||| ||||| ||||| |||||||| || Sbjct 5399660 GACACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCAGATCAG 5399601 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||||| || || || || || ||||| | || ||||| ||||| ||| Sbjct 5399600 CAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGGACATTATCCGATTACAAT 5399541 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || || ||||| || ||| | | ||||| || Sbjct 5399540 ATTCAAAAAGAATCTACTCTCCATTTGGTATTACGTCTGAGAGGTGG 5399494 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||| | || || ||||| || ||||||||||| |||| ||| Sbjct 5397440 ATGCAAATTTTTGTGAAAACACTTACCGGTAAAACCATCACATTAGAAGTTGAAGCATCT 5397381 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| |||||| || || || |||||||| || || ||||| || || Sbjct 5397380 GACACCATTGAAAATGTGAAAGCCAAGATTCAGGATAAAGAGGGAATTCCTCCGGATCAG 5397321 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||| || || ||||| ||||| | | || |||| || || || Sbjct 5397320 CAGCGATTGATCTTTGCAGGCAAACAGCTTGAAGACGGCCGTACACTATCTGACTACAAC 5397261 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || ||||| | || || ||||| || || ||| Sbjct 5397260 ATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGA 5397225 Score = 104 bits (114), Expect = 3e-17 Identities = 166/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| |||| ||||| || || || || ||||| |||| ||| Sbjct 4903444 ATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCTTCG 4903503 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| || || ||||| |||||||| || ||||| || ||| Sbjct 4903504 GACACAATCGAGAACGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAA 4903563 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | || | ||| || |||||||| ||||| | || || ||||| || ||| Sbjct 4903564 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAAT 4903623 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTAA 156054 || || |||| | | || || |||||||||||| | || |||| || ||||| Sbjct 4903624 AT-TCAAAAGGAATCTACACTCCATTTAGTGTTACGTCTACGAGGAGGAATGTAA 4903677 >seq483 Length=1310704 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18413 TCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTT 18472 || || | |||| | || || || || || | || ||||||||||||||||| | || Sbjct 166389 TCCTTCGGATCTCTGATGTAGGTATCTATAAGCAGGGAATACATTTCAGAATGAACATTT 166330 Query 18473 TCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAA 18532 ||||| |||||||| || | ||| || |||| ||||| | ||||| || || Sbjct 166329 TCCATGGCTATCTGGAAGCCATAGAAACATCTTGCCTCAGTGACTTGAACTTCTTGTGAA 166270 Query 18533 AATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACA 18592 ||||| || ||||| || ||||| || || || || | || || || || || | ||| Sbjct 166269 AATCTCTCAACCAAGTTTTCATTTACAATGCCATCTGAAGCCGCAAAGAAAGCAAGGACA 166210 Query 18593 TATTTAATGAAATGTTTTTCATTATCCTT 18621 | || ||||||||| | ||| |||| || Sbjct 166209 TGCTTGATGAAATGTCTCTCACTATCTTT 166181 >seq5052 Length=501 Score = 84.2 bits (92), Expect = 3e-11 Identities = 215/321 (67%), Gaps = 20/321 (6%) Strand=Plus/Minus Query 83929 TTTTAGATTCTATTATCATATAGTCATCGTCGAAATTTACGTGTGTTATGATATATTTAT 83988 |||||||||| || | ||||| |||| |||||| | ||||| ||||||||| Sbjct 430 TTTTAGATTCAATCAAAATATAATCATACATTAAATTTGTATTAGTTATAATATATTTAC 371 Query 83989 ATAAATCTTC-----TATTTCTATAATTTTAGGATTATAATCATAATGAAAGTATTCGCT 84043 | ||| || ||||| ||| || || ||| ||| |||| | || | | Sbjct 370 TAAGATCATCAACAGTATTTATATCATA-----ATCATATTCAGTATGATAATAAT---T 319 Query 84044 ATCAtt---ttttttACTATATATAAATCTCAATTGCGTATTTTTTCTAAATGGAGCCA- 84099 | ||| ||||||||||||||| ||||| || ||||||||||||||| || | Sbjct 318 AGAATTGGATTTTTTACTATATATTAATCTTAACAATGTATTTTTTCTAAAT-AAGTGAT 260 Query 84100 GATCAATATTCTTAATTAAAATATTATCC-ACTTTTATTTTTAATTCTTTGATATAtttt 84158 ||| ||||| |||| | ||| ||| | ||| ||| ||||| || |||| | | Sbjct 259 CATCTATATTTTTAACCATTTCATTTTCCGATGTTTTTTTATAATT-TTGTATATGATAT 201 Query 84159 tttAAATCTGTGAATGATTTAGGAGTTACGTATATTTTATTAAAAAATATATGCAAAGAT 84218 ||||| | |||||| ||| |||| || || ||||||||| ||| || ||| Sbjct 200 TTTAATGATATGAATGCATTATTTGTTATAATAATATTTGTAAAAAATACATGTAAGGAT 141 Query 84219 AATTTGTTAGGATTATTTGAT 84239 | ||| || || | ||||||| Sbjct 140 ATTTTATTTGGTTCATTTGAT 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731474383090800