Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq427 134 4e-26 seq753 87.8 5e-12 >seq427 Length=3364234 Score = 134 bits (148), Expect = 4e-26 Identities = 335/499 (67%), Gaps = 16/499 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||||| | ||||| ||||||||||| ||| ||||| ||| Sbjct 2966925 CTATCAAATCTACCAGGTCTCAACAATGCCTTATCTAATATATCTACTCGATTTGTAGCT 2966866 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT- 288968 || | ||| |||| | | ||| |||||||||||||| || | |||||| Sbjct 2966865 GCAAGTACCACAACATTTGTAGTTGTATTAAATCCATCCATTTCAACCAACAGTTGATTC 2966806 Query 288969 -AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttt 289027 |||||||| || ||| || ||| | || || | | | |||||| Sbjct 2966805 AAAGTGTTT--TCTTGTTCTGAATG---ACCACCAAAACTACG---ACCTCCTCTTTTTC 2966754 Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||| |||||||||||||| ||||| || | | || |||| || || | || || | Sbjct 2966753 TACCTACAGCATCAATTTCATCAATAAACAGTATGCATGGAGCATGTTTACGTGCCATAG 2966694 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 ||| | |||||||| | ||| | |||| ||| ||| |||| |||| ||||| ||| Sbjct 2966693 AAAACATATCTCTTACTCTGGAAGGACCAACACCTACAAACATCTCTAAGAATTCTGAAC 2966634 Query 289148 CGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | || || || |||| |||||| ||||| ||||| ||| | || || | || | Sbjct 2966633 CAGAGACAGTGATAAATGGTACATTAGCTTCTCCTGCAGTTGCTTTTGCGAGTAAAGTTT 2966574 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266 |||| || || || || || |||||| | || || || | ||| || |||| | | Sbjct 2966573 TACCAGTACCGGGAGGACCTGTTAATAGTGCACCTTTGGGAATTTTAGCTCCCA--AATC 2966516 Query 289267 T-TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT-TTTGCCT 289324 | |||||| || |||| | || | ||| | |||| |||| || ||| ||| ||||| | Sbjct 2966515 TATATATTGCTGAGGGTTTTTAAGAAAGTTGACAAATTCCATAATTTC-TATCTTTGCTT 2966457 Query 289325 CATCACATCCTGCTACATC 289343 | ||||| || || ||||| Sbjct 2966456 CTTCACAACCAGCAACATC 2966438 >seq753 Length=6731059 Score = 87.8 bits (96), Expect = 5e-12 Identities = 189/278 (68%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 233260 TAAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAG 233319 ||||||| | ||| ||||| |||||| ||||||||||||||||||||||| ||| | Sbjct 3956951 TAAAAATTGGGCAGCTCCGTGTGCAATCTGACAATCACGTTCCATTTCACCAAAACGTAA 3957010 Query 233320 ACCACCATCATTTG----ACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGAC 233375 |||||||| ||| |||| || | | |||| | || || || || | ||||| Sbjct 3957011 TCCACCATCTCTTGCCCTACCTTCCATAGGCTGTCTCACTAG---AATTTGTAC-TGGAC 3957066 Query 233376 CCTGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACG 233435 | ||| | | ||| ||||||||| | ||||| ||||| | | || ||| | Sbjct 3957067 CTCTAGCTCTAGAATGAATTTTATCATCGACCATGTGCTTTAAACGTTGGTAGTAAGTTG 3957126 Query 233436 GACCAATAAATAGTTCTGCGTGTAATTGTTC-CCCAGATTCACCGCTGTATAAAACTTCA 233494 | || | ||| | || || | ||||| | | || | | || |||| | |||||| Sbjct 3957127 GTCCCAAAAAAACTTGCGCAT-TAATTTTACGGCCTGTATGCCCATTGTACATGACTTCA 3957185 Query 233495 TTACCCGATGAATTGTAACCAATATCTTTTAATAGAGA 233532 ||||| | || ||||||| ||||| ||| ||||| Sbjct 3957186 TTACCACGTAGATGGTAACCATAATCTTGTAACAGAGA 3957223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470997989393031