Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq472 230 2e-55 seq5054 123 2e-23 seq466 114 8e-21 >seq472 Length=1464009 Score = 230 bits (254), Expect = 2e-55 Identities = 647/981 (66%), Gaps = 27/981 (3%) Strand=Plus/Minus Query 5560 CTGTAATCCACCACACCGTCTTCCCAAGTGCCTGCAATCTTGTCGGTC-GCCACACCGGT 5618 || || |||||||||||||| | |||||| ||| || || | | | || || || || Sbjct 408301 CTATAGTCCACCACACCGTCCTGCCAAGTTCCTTTAA-CTGGACCATTAGCAACTCCAGT 408243 Query 5619 GAA---TACATTGTTGTTCACCTGGTCGTGCACTCCGGACCACCCACGACCGTACATGGC 5675 ||| || | || ||| | |||||| ||||| | ||| ||||| |||||||| || Sbjct 408242 GAAGGGTATGTCGTCGTTG---TAGTCGTGAACTCCAGTCCAACCACGTCCGTACATAGC 408186 Query 5676 TACTCCCACAATTAGCTTCCTCGACTCGACGCTCTGATTTAGCAGACGCCTGACGGAAAA 5735 || || |||| ||||| | | || ||| | || | ||||| ||||| || Sbjct 408185 AACACCGACAACCAGCTTTTTGGGCTGGACACCTTGGGTCAGCAGGTACCTGATACCGAA 408126 Query 5736 ATCGGTCGTGTACGTTTCGCCTGGGTTCCACGATGGAGCGAACAGAGGTGTCTGGTGTCC 5795 ||||| ||||| ||||| || |||| |||||||| | |||| ||||||||||| Sbjct 408125 GTCGGTGGTGTAAGTTTCCTTAGGACTCCAAGATGGAGCATATAGAGCAGTCTGGTGTCC 408066 Query 5796 CAGA--TCCGTCAACGACCAGGCACCCTTGTAATCGTACGTCATGACAAATATGTGATCA 5853 |||| ||| | ||||||||||||||| | ||||| |||| || || || || || Sbjct 408065 CAGAGTGTCGTTA--GACCAGGCACCCTTGAAGTCGTAACTCATAACGAAGATATGGTCC 408008 Query 5854 AGGTATTTTTGTGCGGTGGCGTAGTCGACGACGTCGATCTTGTCGTGTCCCGCGCCGACG 5913 | |||||| || || ||||| ||||| | ||||||||| || |||| || | Sbjct 408007 ATGTATTTCTGGGCTTCCTTGTAGTTCACGACTTGGATCTTGTCCCAACCGGCGCTGATG 407948 Query 5914 GCGCTCGTCAACT-GTAGCCGTCTACCCCGCTTCTCGCCCAACTCATCAAGCATCACGCG 5972 || ||||||| ||| |||||| || | ||| |||||| | ||| || Sbjct 407947 GCAGAGGTCAACTCGTA-AGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACG 407889 Query 5973 AAGTTCCCGCAGCAAAAGAG-TGTAGGTGTTGCGATCC-ACCTCGGCATTACCCAACACA 6030 | |||| | | ||| || | || | ||| | | | | |||| | || Sbjct 407888 TAATTCCTTC-----ATGAGCTGAACGTATACATCTCCGTCTTTAGGACTACCGAGATCA 407834 Query 6031 GAATTGGCACCCTTTCCACCCGGAAACTCCCAGTCGATGTCCACTCCGTCAAAGAACTTC 6090 | || || || || ||||| || |||||||| || ||||| || || || ||||||||| Sbjct 407833 GGGTTAGCGCCTTTGCCACCTGGGAACTCCCAATCAATGTCGACACCATCGAAGAACTTC 407774 Query 6091 CAGGTCTCCAGAAACTCGCGGACGCTTGTGACGAACACCTCACGCTTAGAGTCATCGTTC 6150 || || | || || || ||| | ||||| |||||||| | | ||| | Sbjct 407773 CAAGTTTGGAGGAAGTCTTTCACGGAGGCAACGAAACGATCACGCTTGGTTTTGTCGGTG 407714 Query 6151 ATGAAATAAAACGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGGACCGTCAACGAG 6210 | ||| | || |||||| ||| ||||| || || || || |||| |||| | || Sbjct 407713 AAGAAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATTGAAGGTAAGACCTTTAAGCCA 407654 Query 6211 GGGTTGTGACGTTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGTACTCTTCGTTGTAC 6270 | || |||| | ||||||||| || |||||||| ||||| ||||| | Sbjct 407653 GTATTCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAG 407594 Query 6271 GCCTCAACACCTTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTTACCTTG 6330 | | | || || || ||||| |||| || |||||| ||||| ||| |||||| Sbjct 407593 GACGATAATCCCTTTTGAGGTTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTG 407534 Query 6331 AAGTCATCGCGACCAGCGCAGGATTTCTGTAGCGCCTCAAAGGAATTG---GGAATCTGC 6387 ||||| || || || ||| || ||||| || | || || || ||| | Sbjct 407533 AAGTCTTCACGGCCGCTGCATGAACGTTGTAGTGCTTGAA---AACTGCCCTCAATTTCT 407477 Query 6388 TTGAGGGCGTCGTTTATGCCGCTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGC 6447 || | ||| || ||||| |||||||||||| |||||||| ||||| |||| || Sbjct 407476 TTCAAACTGTCATTGATGCCATCACCACCACAAATCGGAATGAAGCCGTAGAGCAAATGA 407417 Query 6448 GTCAGATTAGGTATTGGTACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCACTCC 6507 ||||| || || | || || ||| | || |||| ||| |||||| ||||| || Sbjct 407416 GTCAGGTTCGGAACCGGAACGCGGTCCACAGGGAACTTTCTAGGATACACACCCCATTCG 407357 Query 6508 ACGAAATACGCACCGACGACT 6528 ||||| || || || || ||| Sbjct 407356 ACGAAGTAAGCGCCCACCACT 407336 >seq5054 Length=501 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || |||||||| || ||||| |||| | |||| |||| |||| |||||| || |||||| Sbjct 398 TCTTTCTGAATATTGTAGTCTGATAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCGAAG 339 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||||| || |||||| | || | || |||||||| | |||||| |||||| | Sbjct 338 ATCAGTCTCTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATTTTTGCTTTGACATTT 279 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || || || || |||| ||| || ||||| || || || || |||||| Sbjct 278 TCAATTGTATCTGAAGCTTCAACCTCAAGGGTGATTGTCTTGCCAGTTAGAGTTTTTACA 219 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 218 AAGATCTGCAT 208 >seq466 Length=1632705 Score = 114 bits (126), Expect = 8e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34747 ATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC 34806 ||| ||||| || | |||| |||||||||| ||| || ||||| ||||||||||| Sbjct 1583279 ATTACCTCCTCTAAGTCTCAAAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTC 1583338 Query 34807 CGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTG 34866 || || |||| |||| || | ||| || ||||| ||||| || ||||| |||||| | Sbjct 1583339 TGAAAGAGTGCGGCCATCTTCTAATTGTTTCCCGGCAAAGATGAGACGTTGTTGGTCTGG 1583398 Query 34867 CGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTC 34926 || | || |||||||| | ||||| |||||| | | || | || || || Sbjct 1583399 AGGAATACCTTCCTTGTCTTGGATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTC 1583458 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || |||||||| ||||| ||||| || || || || ||||| Sbjct 1583459 CACCTCCAATGTAATGGTCTTCCCCGTAAGGGTTTTGACGAATATTTGCAT 1583509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325520278793597