Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq472 244 8e-60 seq762 221 1e-52 seq747 98.7 8e-16 seq8861 96.9 3e-15 seq428 89.7 4e-13 >seq472 Length=1464009 Score = 244 bits (270), Expect = 8e-60 Identities = 590/883 (67%), Gaps = 25/883 (3%) Strand=Plus/Plus Query 29073 GCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCTG 29132 || || || || |||||||| || ||| | || || || || ||| || ||| | Sbjct 407346 GCTTACTTCGTCGAATGGGGTGTGTATCCTAGAAAGTTCCCTGTGGACCGCGTTCCGGTT 407405 Query 29133 CCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAAC 29192 || ||||| | ||| || | ||||| ||||| || ||||| || || || || |||| Sbjct 407406 CCGAACCTGACTCATTTGCTCTACGGCTTCATTCCGATTTGTGGTGGTGATGGCATCAAT 407465 Query 29193 GACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGT 29252 ||| | ||| ||| ||||||||| | || || ||||| || |||| |||||| Sbjct 407466 GACAGTTTGAAAGAAATTGAGGGCAGTTTTCAAGCACTACAACGTTCATGCAGCGGCCGT 407525 Query 29253 TCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGC 29312 ||| ||||| || |||| |||||||| ||||| || | || ||||| |||||||| Sbjct 407526 GAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAACCTCAAAAGGGA 407585 Query 29313 GTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTG 29372 | || | |||||||||||||||||||| |||||||| ||||| ||| | || | Sbjct 407586 TTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGATGCAGTTGAAACAA 407645 Query 29373 GCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCCGTTC 29432 || ||| | | | || | | || || || || |||||||||||| |||| || ||| Sbjct 407646 GCGAATACTGGCTTAAAGGTCTTACCTTCAATTGGTGGCTGGACATTGGCCGATCCCTTC 407705 Query 29433 TATTTCATGCACGACGCGGAAAAAC-GGCGTG--TGTTT-GTGGACTCGGTCAGAGAATT 29488 | ||| | |||| |||| | ||||| |||| || | ||| || | ||| || Sbjct 407706 TTCTTCTTCACCGAC----AAAACCAAGCGTGATCGTTTCGTTGCCTCCGTGAAAGACTT 407761 Query 29489 TCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAA 29548 || || |||||||| || || || || ||||| || |||||||| || |||||||| Sbjct 407762 CCTCCAAACTTGGAAGTTCTTCGATGGTGTCGACATTGATTGGGAGTTCCCAGGTGGCAA 407821 Query 29549 AGGCGCCAACCCGACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATT---TT 29605 |||||| ||||| || || | | | | | || | |||| || || | Sbjct 407822 AGGCGCTAACCCTGATCTCGGTA-----GTCCTAAAGACGGAGATGTAT-ACGTTCAGCT 407875 Query 29606 ACTAAAGGAATTGCGCGCAATGATGGACGAG-TTACAATTGCAAACGGGCAAAACGTACG 29664 | |||||||| || |||| |||| ||| | | || | || || | ||| |||| Sbjct 407876 CATGAAGGAATTACGTCAAATGTTGGATGAGCTGGCGGCTG-AGACTGGTAGAACTTACG 407934 Query 29665 AGTTGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTG 29724 ||||||| || ||||| |||| |||||||| || || || ||| | | | Sbjct 407935 AGTTGACCTCTGCCATCAGCGCCGGTTGGGACAAGATCCAAGTCGTGAACTACAAGGAAG 407994 Query 29725 CGCAAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAA 29784 | || || | | || | || ||| | ||||| ||||| || || || || ||||| | Sbjct 407995 CCCAGAAATACATGGACCATATCTTCGTTATGAGTTACGACTTCAAGGGTGCCTGGTCTA 408054 Query 29785 ACACCGATTTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGAACTGT 29844 || | | |||| |||| ||| |||| || || || ||||| || || ||| | Sbjct 408055 ACGACACTCTGGGACACCAGACTGCTCTATATGCTCCATCTTGGAGTCCTAAGGAAACTT 408114 Query 29845 ACAACACGGACCACGCCGTTAAGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAAA--- 29901 ||| ||| ||| || | | || || || ||| || || || || ||||| Sbjct 408115 ACACCACCGACTTCGGTATCAGGTACCTGCTGACCCAAGGTGT---CCAGCCCAAAAAGC 408171 Query 29902 TTATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGT 29944 | |||| || || || |||||||| || |||||||| || || Sbjct 408172 TGGTTGTCGGTGTTGCTATGTACGGACGTGGTTGGACTGGAGT 408214 >seq762 Length=5301712 Score = 221 bits (244), Expect = 1e-52 Identities = 371/527 (70%), Gaps = 21/527 (4%) Strand=Plus/Plus Query 103550 CCGCAACGACTGGCCGCCAACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGC 103609 ||| ||| | ||||| |||||| |||| |||| | || ||||||||||| ||| |||| Sbjct 753886 CCGGAACAATTGGCCCGCAACGGATTCTACTACCTCGGTCGCGGCGACGAGGTGTGCTGT 753945 Query 103610 GCGTTTTGCAAAGTGGAGATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCAT 103669 || || || || || || |||||| | |||| || |||||||| || || ||||||| Sbjct 753946 GCTTTCTGTAAGGTAGAAATTATGAGGTGGGTCGAAGGCGACGATCCTGCCGCCGATCAT 754005 Query 103670 CAGAGGTGGGCGCCGCAGTGTCCGTTCCT--Gaaaa-aaaCGGCTGCTGGCGC--GCTGC 103724 | ||| |||||||| |||||||| || | ||||| ||| | ||| ||| | | Sbjct 754006 CGGAGATGGGCGCCCCAGTGTCCCTTTGTACGAAAACAAATGTATGCCAACGCTGGGGGA 754065 Query 103725 CCGCCGGCCTTGCGATGGACGGGCAGGACGAGTGCGGCGTGAGCGCGCTGCCGTCCACCA 103784 | ||||| | || ||| ||||| || || | || ||| |||| Sbjct 754066 GAGGCGGCC----GCTGT-CGGTAGAGACGAATGTGGGGCCAGTGCGG------CCACGC 754114 Query 103785 ACGCCTGCGTGCGCATGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGT 103844 | |||| | |||||||||||||||| |||| | |||| | || |||||||| | || Sbjct 754115 A-GCCTCCC--CGCATGCCCGGCCCCGTGCACGCGCGGTACTCCACCGAGGCCGCGCGGC 754171 Query 103845 TACAAACTTTTAAGGATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAG 103904 | || || ||||| ||||| | || || || ||||| ||| | |||| || | Sbjct 754172 TCGCCACCTTCAAGGACTGGCCGAGATGTATGCGCCAAAAACCCGAGGAACTGGCAGAGG 754231 Query 103905 CCGGATTCTACTACACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTC 103964 ||||||||| ||| || ||||| | ||||| |||||||||||||| |||||||| || | Sbjct 754232 CCGGATTCTTCTATACAGGCCAAGGTGACAAAACGAAATGCTTCTATTGCGACGGAGGGC 754291 Query 103965 TAAAGGATTGGGAGCACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCG-CCGT 104023 |||| |||||||| |||||| | |||||| |||| ||||| | | |||| ||| Sbjct 754292 TAAAAGATTGGGAAAGCGATGACGTTCCGTGGGAACAGCACGC-CAGATGGTTCGACCGC 754350 Query 104024 TGCGCATACGTGCTACTTGTCAAGGGCCACGATTATGTACAAAAGGT 104070 ||||| ||||||| | | || || || | || || | || ||||| Sbjct 754351 TGCGCGTACGTGCAATTGGTGAAAGGACGTGACTACATTCAGAAGGT 754397 >seq747 Length=8313734 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| ||||| | || || |||||||| || | ||| || || Sbjct 5397440 ATGCAAATTTTTGTGAAAACACTTACCGGTAAAACCATCACATTAGAAGTTGAAGCATCT 5397381 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| |||||| |||||||| || | || ||||||| Sbjct 5397380 GACACCATTGAAAATGTGAAAGCCAAGATTCAGGATAAAGAGGGAATTCCTCCGGATCAG 5397321 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| || | || | ||| || |||||||| || |||| | ||| | | ||||||||| Sbjct 5397320 CAGCGATTGATCTTTGCAGGCAAACAGCTTGAAGACGGCCGTACACTATCTGACTACAAC 5397261 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || || ||||| |||| |||| |||||| |||| || || Sbjct 5397260 ATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGG 5397214 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| ||||| | || || |||||||| || | ||| || || Sbjct 5398353 AATGCAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATC 5398294 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || ||| |||||| || ||||| || | ||| ||||| Sbjct 5398293 TGACACCATCGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCA 5398234 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| || | |||| |||||| |||||||| || || | ||| | | |||||||| Sbjct 5398233 GCAGCGATTGATTTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTACAA 5398174 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || || || ||||| |||| |||| |||||| |||| || || Sbjct 5398173 CATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGG 5398126 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| ||||| | || || |||||||| || | ||| || || Sbjct 5398809 AATGCAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATC 5398750 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || ||| |||||| || ||||| || | ||| ||||| Sbjct 5398749 TGACACCATCGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCA 5398690 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| || | |||| |||||| |||||||| || || | ||| | | |||||||| Sbjct 5398689 GCAGCGATTGATTTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTACAA 5398630 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || || || ||||| |||| |||| |||||| |||| || || Sbjct 5398629 CATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGG 5398582 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||||||||| | || || |||||||| || | ||| || || Sbjct 5397212 ATGCAGATCTTTGTCAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATCT 5397153 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| |||||| || ||||| || | || ||||||| Sbjct 5397152 GACACCATCGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCGGATCAG 5397093 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| || | || | |||||| |||||||| || || | | ||| | | ||||||||| Sbjct 5397092 CAGCGATTGATCTTTGCGGGCAAACAGCTTGAAGATGGCCGTACACTATCTGACTACAAC 5397033 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || || ||||| || || |||| |||||| | || || || Sbjct 5397032 ATCCAGAAAGAATCTACTTTACATTTGGTTTTGAGACTCCGTGGTGG 5396986 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| ||||| | || || |||||||| || | ||| || || Sbjct 5399264 ATGCAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACACTAGAAGTTGAAGCATCT 5399205 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| ||||||| || ||||| || | || ||||||| Sbjct 5399204 GACACCATTGAGAATGTGAAAGCAAAGATTCAGGACAAAGAGGGAATTCCTCCGGATCAG 5399145 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | |||||| |||||||| || || | | ||| | | ||||||||| Sbjct 5399144 CAGCGGTTGATCTTTGCGGGCAAACAGCTTGAAGATGGCCGTACACTATCCGACTACAAC 5399085 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || || ||||| ||||| |||| |||||| |||| || || Sbjct 5399084 ATCCAGAAAGAATCTACTCTGCACTTGGTTTTGAGACTGCGTGGTGG 5399038 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| ||||| | || || |||||||| || | ||| || || Sbjct 5397897 AATGCAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATC 5397838 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || ||| |||||| || ||||| || | ||| ||||| Sbjct 5397837 TGACACCATCGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCA 5397778 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| || | |||| ||| || |||||||| || || | ||| | | |||||||| Sbjct 5397777 GCAGCGATTGATTTTTGCTGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTACAA 5397718 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || || || ||||| |||| |||| |||||| |||| || || Sbjct 5397717 CATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGG 5397670 >seq8861 Length=554 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| |||||||| ||||| | || || |||||||| || | ||| || || Sbjct 241 AATGCAGATTTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATC 182 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || ||| |||||| || ||||| || | ||| ||||| Sbjct 181 TGACACCATCGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCA 122 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| || | |||| |||||| |||||||| || || | ||| | | |||||||| Sbjct 121 GCAGCGATTGATTTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTACAA 62 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || || || ||||| |||| |||| |||||| |||| || || Sbjct 61 CATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGG 14 >seq428 Length=3255295 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 94234 CTTCTTTTGGCCCATGCGATGAATACGGTCTTGCGCCTGCAGCTCGATCTGCGGGTTCCA 94293 ||| | |||||| | ||| | | ||||| ||||||||| |||||| |||||||||||| Sbjct 2871966 CTTATCTTGGCCGACGCGGTAGACGCGGTCCTGCGCCTGCTGCTCGAGCTGCGGGTTCCA 2871907 Query 94294 GTGGGGCTCCAGCATAATAATGTGATTGCCGCCGGTTAGGTTTAACCCCACGCCGCC 94350 ||| || ||||||| | | ||| ||| ||||| ||||| || |||||||| || Sbjct 2871906 GTGCGGGTCCAGCAGGAACAGGTGGTTGGCGCCGCACAGGTTCAAACCCACGCCCCC 2871850 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 94241 TGGCCCATGCGATGAATACGGTCTTGCGCCTGCAGCTCGATCTGCGGGTTCCAGTGGGGC 94300 ||||| | ||| | | ||||| ||||||||| |||||| ||||||||||||||| || Sbjct 2870533 TGGCCGACGCGGTAGACGCGGTCCTGCGCCTGCTGCTCGAGCTGCGGGTTCCAGTGCGGG 2870474 Query 94301 TCCAGCATAATAATGTGATTGCCGCCGGTTAGGTTTAACCCCACGCCGCC 94350 ||||||| | | ||| ||| ||||| ||||| || |||||||| || Sbjct 2870473 TCCAGCAGGAACAGGTGGTTGGCGCCGCACAGGTTCAAACCCACGCCCCC 2870424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398665512840007