Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq11118 138 2e-27 seq466 129 9e-25 seq747 127 3e-24 seq5054 123 4e-23 >seq11118 Length=575 Score = 138 bits (152), Expect = 2e-27 Identities = 286/413 (69%), Gaps = 17/413 (4%) Strand=Plus/Plus Query 136380 TTCGGCatttattaattttgaatatgtttcatattgaaatatattatctatattgcttat 136439 ||| ||||| ||||||| ||| |||||||||||||||||||||| || | | Sbjct 63 TTCAGCATTAGTTAATTTACCATAAACTTCATATTGAAATATATTATCTTTAGGTGTAGT 122 Query 136440 tataattatCTCACCTCTAGATTGTAAATATGTAGCTTCTTCAAAATTCAACATATCCAA 136499 |||||| || | ||| ||||| | ||| | ||||| | ||||| |||||||| || Sbjct 123 TATAATCATATAACCATGTGATTGAATATAATTTGCTTCAACGAAATTAAACATATC-AA 181 Query 136500 TAC-TTCACCACAAATTTTACATATAGCTAATTTATTTTTAAATAATATATATTCATTAA 136558 || ||||||||| ||||||||||| ||||| |||||| |||| ||||||||| || || Sbjct 182 TAGATTCACCACATATTTTACATATTGCTAAATTATTTGAAAATGATATATATTTATCAA 241 Query 136559 GAAATTTATTTGTATTCTCATAAAAATTGACTACAGATTTAAATAATTTTTTAGCATTAT 136618 ||| ||| || | | ||||||| ||| |||||||| | ||| || || Sbjct 242 TAAACGCATTATAGTTATTAAAAAAATTATTTACTTCTTTAAATACCATATTATAATCAT 301 Query 136619 CAACATGCGCGCAAATAGTA-ATA-TCATATTGTAATGGTT--CAGGTTCATATAACTTA 136674 ||| || | | || ||| ||| |||||| ||| || |||||||||||| ||| Sbjct 302 CAATAT--GTTTACATGGTATATATTCATAT--ACATGTTTAATAGGTTCATATAATTTA 357 Query 136675 TAATAGTAAGTATATTCTGGTGCAAT--ATTTATATATTTAGTTATTACAGGAAATATAC 136732 ||| | ||||||| | | ||| || | |||| | ||| | | ||||| | Sbjct 358 AAATTATTTGTATATTTTAAT--AATGGATATTCATATACATTTAATGTATCAAATAATC 415 Query 136733 TAGAATAATAAATATTTAAAATTGGACTTATA-AATACA--CGTTGATATAAT 136782 || ||||||| || ||||| || || | || ||| | |||||||||| Sbjct 416 TAATATAATAACAATGTAAAAAATAACATAAACAAAACATTCTTTGATATAAT 468 >seq466 Length=1632705 Score = 129 bits (142), Expect = 9e-25 Identities = 171/236 (72%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | ||||| | || || || || ||||| | || || ||| | || Sbjct 1583508 TGCAAATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAAGCTTCCG 1583449 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||| ||| |||||| ||| || ||||| ||||| || || |||| Sbjct 1583448 ACACTATCGAAAATGTCAAAGCTAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAAC 1583389 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| ||||| || ||||||||||| ||| | || | |||| ||||| | Sbjct 1583388 AACGTCTCATCTTTGCCGGGAAACAATTAGAAGATGGCCGCACTCTTTCAGACTATAACA 1583329 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAA-ATAAAT 146266 | || |||||||| || | || | || || || | ||||||||||| |||||| Sbjct 1583328 TCCAGAAAGAATCCACACTTCACCTGGTTTTGAGACTTAGAGGAGGTAATATAAAT 1583273 >seq747 Length=8313734 Score = 127 bits (140), Expect = 3e-24 Identities = 166/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || || ||||||| | || || ||||| || || | || || ||| ||| | Sbjct 5399719 TGCAGATTTTTGTAAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCATC-C 5399661 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || ||||||||||| ||||| ||| ||||| |||||||| || ||||| Sbjct 5399660 GACACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCAGATCAG 5399601 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || |||| ||||| || || |||||| | || || | || ||| | ||||| ||| Sbjct 5399600 CAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGGACATTATCCGATTACAAT 5399541 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || ||||||||||| ||| ||||||| |||||||| | ||||| || Sbjct 5399540 ATTCAAAAAGAATCTACTCTCCATTTGGTATTACGTCTGAGAGGTGG 5399494 >seq5054 Length=501 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| |||| || || ||||| || |||| || ||| | | Sbjct 209 TGCAGATCTTTGTAAAAACTCTAACTGGCAAGACAATCACCCTTGAGGTTGAAGCTTCAG 268 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| ||||| || || ||||||||||| || || |||| Sbjct 269 ATACAATTGAAAATGTCAAAGCAAAAATCCAGGACAAGGAAGGCATTCCTCCAGACCAAC 328 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || || || || || ||||| || ||| | || ||| |||| || |||| Sbjct 329 AGAGACTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCAGACTACAATA 388 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| || | || |||||| |||| | ||||||||| Sbjct 389 TTCAGAAAGAATCTACCCTGCACTTAGTACTACGTCTTCGAGGAGGTA 436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785739285621960