Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq753 95.1 2e-14 seq749 82.4 1e-10 >seq753 Length=6731059 Score = 95.1 bits (104), Expect = 2e-14 Identities = 172/246 (70%), Gaps = 17/246 (7%) Strand=Plus/Minus Query 192880 CTATGGTTAAACAAGCCATTGGA-TTTATTCCGTGTCACAACTTA-------AAAACGGA 192931 |||||| ||||||||| || ||| ||||| |||||| || | || ||| Sbjct 3958080 CTATGGGTAAACAAGCTATGGGAGTTTATA-----TCACAAATTTCCATGTTAGAATGGA 3958026 Query 192932 AACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCACA-GATAT-TGCA 192989 ||| | ||||| || ||||||| || ||| |||| ||||| ||| ||| | || | Sbjct 3958025 TACACTGGCTCATGTTTTGTATTATCCTCACAAAACCCTGGTTACGACAAGATCTATGGA 3957966 Query 192990 AAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGC 193049 | | ||| | ||||| ||| ||| || ||||| | ||||||||||| ||| Sbjct 3957965 ATACTTACGAT-TTAGAGAATTG-CCAGCAGGAATTAACTCCATTGTTGCTATTCTTTGT 3957908 Query 193050 TATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGA 193109 ||||| || ||||| |||||||| ||| ||||||| ||| | || || | || |||||| Sbjct 3957907 TATACCGGATATAACCAAGAAGATAGTGTTATTTTGAATGCATCTGCTGTAGAGAGAGGA 3957848 Query 193110 TTATTT 193115 || ||| Sbjct 3957847 TTCTTT 3957842 Score = 86.0 bits (94), Expect = 8e-12 Identities = 126/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 193438 TACGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGT 193496 |||| || || |||| || ||||| ||| |||| || |||| | |||||||||| ||| Sbjct 3957483 TACGCATCCCGCAAATTGGAGATAAGTTTGCTTCACGACATGGTC-AAAAAGGAACATGT 3957425 Query 193497 GGTATGATTTATTCA--CAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATA 193554 || || | || || |||||||||||||||||||| |||||| |||||||| Sbjct 3957424 GGAAT--TCAATACAGGCAAGAAGATATGCCATTTACTTGCGAAGGTATAACACCAGATA 3957367 Query 193555 TTATTATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 | ||||||||||| | ||| || || | ||||| ||| ||| | |||| Sbjct 3957366 TCATTATTAATCCTCACGCTATCCCTTCACGTATGACAATTGGTCACTTGATTG 3957313 >seq749 Length=8107424 Score = 82.4 bits (90), Expect = 1e-10 Identities = 53/57 (93%), Gaps = 1/57 (2%) Strand=Plus/Minus Query 51990 TATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGA 52046 || ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| Sbjct 6029654 TACAATGCTGATTTTGATGGAGATGAAATGAATTTGCATGTTCCTCAATCA-ATGGA 6029599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634832515949640