Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq753 91.5 2e-13 seq749 82.4 1e-10 >seq753 Length=6731059 Score = 91.5 bits (100), Expect = 2e-13 Identities = 171/244 (70%), Gaps = 13/244 (5%) Strand=Plus/Minus Query 192433 CTATGGTTAAACAAGCCATTGG-GTTTATTCC-----TTGCCACAACTTAAAAACGGAAA 192486 |||||| ||||||||| || || |||||| | || ||| | | || ||| | Sbjct 3958080 CTATGGGTAAACAAGCTATGGGAGTTTATATCACAAATTTCCATG---TTAGAATGGATA 3958024 Query 192487 CAGTCTCTCATACATTAAATTATCCACAAAAACCACTTGTTACCACA-GATAT-TGCAAA 192544 || | ||||| || ||||||| || ||| | || ||||| ||| ||| | || || Sbjct 3958023 CACTGGCTCATGTTTTGTATTATCCTCACAAAACCCTGGTTACGACAAGATCTATGGAAT 3957964 Query 192545 ATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTA 192604 | ||| | ||||| ||| ||| || ||||| | ||||||||||| ||| || Sbjct 3957963 ACTTACGAT-TTAGAGAATTG-CCAGCAGGAATTAACTCCATTGTTGCTATTCTTTGTTA 3957906 Query 192605 TACTGGCTATAACCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATT 192664 ||| || |||||||||||||| ||| ||||||| ||| | || || | || |||||||| Sbjct 3957905 TACCGGATATAACCAAGAAGATAGTGTTATTTTGAATGCATCTGCTGTAGAGAGAGGATT 3957846 Query 192665 ATTT 192668 ||| Sbjct 3957845 CTTT 3957842 >seq749 Length=8107424 Score = 82.4 bits (90), Expect = 1e-10 Identities = 53/57 (93%), Gaps = 1/57 (2%) Strand=Plus/Minus Query 50440 TATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGA 50496 || ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| Sbjct 6029654 TACAATGCTGATTTTGATGGAGATGAAATGAATTTGCATGTTCCTCAATCA-ATGGA 6029599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628189726855680