Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq472 230 2e-55 seq747 120 3e-22 seq762 113 4e-20 seq5054 100 3e-16 >seq472 Length=1464009 Score = 230 bits (254), Expect = 2e-55 Identities = 357/504 (71%), Gaps = 12/504 (2%) Strand=Plus/Plus Query 24793 GGTGGCGGCGTACTTTGTCGAGTGGGGTGTGTACCCGCGCCAGTTTCCCGTCGACAAGGT 24852 ||||| || ||||| ||||| ||||||||||| || | |||| || || ||| || Sbjct 407339 GGTGGGCGCTTACTTCGTCGAATGGGGTGTGTATCCTAGAAAGTTCCCTGTGGACCGCGT 407398 Query 24853 GCCCGCGCCCAACCTCTCGCACTTGCTCTACGGCTTTGTGCCCATCTGCGGCGGCGCGGG 24912 || | || ||||| | || |||||||||||||| | || || || || || | || Sbjct 407399 TCCGGTTCCGAACCTGACTCATTTGCTCTACGGCTTCATTCCGATTTGTGGTGGTGATGG 407458 Query 24913 CATCAACGA---TGCGCTAAAAACTGTGCCGGGCAGCTTCGAGGCGCTGCAACGATCGTG 24969 |||||| || | | | ||| || | ||||| || | || || ||||| || || Sbjct 407459 CATCAATGACAGTTTGAAAGAAATTGAG---GGCAGTTTTCAAGCACTACAACGTTCATG 407515 Query 24970 CGCCGGCCGCGCCGACTTCAAGGTGGCCATCCACGATCCGTGGGCGGCCATACAGAAACC 25029 | |||||| | ||||||||||| | ||||||||||| ||||||||| | |||||||| Sbjct 407516 CAGCGGCCGTGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAACC 407575 Query 25030 GCAGAAAGGCGTGTCCGCGTGGAACGAGCCGTACAAGGGCAACTTTGGCCAGCTGATGGC 25089 || || || | || | ||||||||||| ||||| || ||||| || ||||||||| Sbjct 407576 TCAAAAGGGATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGATGCA 407635 Query 25090 GCTGAAGC--GCGCCTACCCGCACCTCAAAGTGCTGCCCTCGATCGGCGGCTGGACGCTG 25147 | |||| | ||| ||| | | | || || | || || || || |||||||| || Sbjct 407636 GTTGAAACAAGCGAATACTGG--CTTAAAGGTCTTACCTTCAATTGGTGGCTGGACATTG 407693 Query 25148 TCCGACCCGTTCTTCCACATGCACGACAAGGCGGCGCGCCAGACGTTT-ATCGACTCGGT 25206 |||| || |||||| | | |||||| | ||| | ||||| | | ||| || Sbjct 407694 GCCGATCCCTTCTTCTTCTTCACCGACAAAACCAAGCGTGA-TCGTTTCGTTGCCTCCGT 407752 Query 25207 GCAAGAGTACCTCGTCACCTGGAAGTTCTTTGACGGCGTCGACCTCGATTGGGAGTTTCC 25266 | |||| | |||| || ||||||||||| || || |||||| | ||||||||||| || Sbjct 407753 GAAAGACTTCCTCCAAACTTGGAAGTTCTTCGATGGTGTCGACATTGATTGGGAGTTCCC 407812 Query 25267 CGGCGGCAAGGGCGCCAACCCGGA 25290 || ||||| ||||| ||||| || Sbjct 407813 AGGTGGCAAAGGCGCTAACCCTGA 407836 >seq747 Length=8313734 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| ||||| || || ||||| || || ||| ||| || ||||||||||| Sbjct 4903412 GTGGATTCTTTTTGAATGTTGTAGTCTGACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCA 4903353 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | ||||| ||||| || || ||||| || ||||| ||||| |||||| ||| Sbjct 4903352 GCAAAGATGAGACGCTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATCTTCGCCTTC 4903293 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| | |||||||| || | |||| ||| |||||||| |||||| Sbjct 4903292 ACATTCTCAATTGTGTCCGAAGGCTCCACTTCTAAAGTGATGGTCTTGCCGGTTAGAGTT 4903233 Query 133644 TTTACGAAAATCTGCATGGCT 133664 || || || ||||||||| || Sbjct 4903232 TTCACAAAGATCTGCATGCCT 4903212 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || || || || || |||||||| || || ||| ||| || ||| Sbjct 4903649 AAATGGAGTGTAGATTCCTTTTGAATATTGTAGTCTGACAAGGTGCGTCCGTCTTCCAGC 4903590 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | ||||| ||||| || || ||||| || ||||| ||||| |||| Sbjct 4903589 TGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATC 4903530 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | ||| | ||||| | | || || || | |||| ||| || ||| Sbjct 4903529 TTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCTACTTCCAAAGTGATGGTCTTTCCG 4903470 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 ||||||||||| ||||| ||||||||| || Sbjct 4903469 GTCAGAGTTTTCACGAAGATCTGCATGCCT 4903440 Score = 102 bits (112), Expect = 8e-17 Identities = 152/211 (72%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||| | || || ||||| || |||||||||||| || || || ||| || | Sbjct 5399515 AAATGGAGAGTAGATTCTTTTTGAATATTGTAATCGG--ATAATGTCCGTCCGTCTTCAA 5399572 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | || || || ||| |||| || |||||||| || ||||| ||||| || ||||| ||| Sbjct 5399573 GTTGTTTCCCAGCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCT-TGA 5399631 Query 133573 TCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 |||||||| | | || | ||||||| | || || || | || | |||||| Sbjct 5399632 ATTTTTGCTTTTACATTTTCTATGGTGTCGGATGCTTCGACTTCTAATGTTATGGTTTTA 5399691 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCATGG 133662 || || ||||||||||| ||||||||||||| Sbjct 5399692 CCAGTGAGAGTTTTTACAAAAATCTGCATGG 5399722 >seq762 Length=5301712 Score = 113 bits (124), Expect = 4e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 50026 TACAAACGGACACTGCGGCGCCCAGCGCGCGTGGTCGGTGGCCACGTCGTCGCCCTCCAT 50085 |||||| |||||||| |||||||| | | || |||| ||| |||||||| || | Sbjct 754035 TACAAAGGGACACTGGGGCGCCCATCTCCGATGATCGGCGGCAGGATCGTCGCCTTCGAC 753976 Query 50086 CCACCGCATGATTTCTACCTTGCAGAATGCGCAGCGCACGGTGTCGCCGTTGCCAAAATA 50145 ||||| ||| ||||||||||| ||||| || |||| ||| ||||||| || | || Sbjct 753975 CCACCTCATAATTTCTACCTTACAGAAAGCACAGCACACCTCGTCGCCGCGACCGAGGTA 753916 Query 50146 GTAGAATCCGTTGCGCGCCAGCTGCTCGGGCGACA 50180 ||||||||||||||| |||| || || |||| || Sbjct 753915 GTAGAATCCGTTGCGGGCCAATTGTTCCGGCGTCA 753881 >seq5054 Length=501 Score = 100 bits (110), Expect = 3e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || |||||||| |||||||| || | ||| | | | || || | Sbjct 413 AAGTGCAGGGTAGATTCTTTCTGAATATTGTAGTCTGATAAGGTGCGGCCA-TCTTCCAA 355 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| | || || | ||| ||||| ||||| |||||||||||||| ||| Sbjct 354 TTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGGAT 295 Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||||||| || | |||| || || | | || || || | ||||| || |||| Sbjct 294 -TTTTGCTTTGACATTTTCAATTGTATCTGAAGCTTCAACCTCAAGGGTGATTGTCTTGC 236 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||||||||| || |||||||| Sbjct 235 CAGTTAGAGTTTTTACAAAGATCTGCAT 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483158163522120