Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq466 260 3e-64 seq749 116 9e-21 seq756 86.0 1e-11 >seq466 Length=1632705 Score = 260 bits (288), Expect = 3e-64 Identities = 448/642 (70%), Gaps = 9/642 (1%) Strand=Plus/Minus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 || || ||||| | | ||| || ||||| |||||||| ||||| ||| | |||||| Sbjct 918439 TCATGTTTTCTAGTGGCAATGAAAGATGACAGCATTGAAGGAATTTACGATAC-CTTAAA 918381 Query 110580 GAAAC-TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCG 110638 | | |||| | || |||||| | || ||||||||| | || || || ||| | Sbjct 918380 GCAGTGTGCTTTGATATCTAAATCTGCAGGTGGAATTGGTGTCCATGTCCACTGTATAAG 918321 Query 110639 CTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTT 110698 | ||||| | |||| ||| | | || |||| |||| ||| ||||| |||||||| Sbjct 918320 GGCTAAAGGTACTTATATAGCAGGAACAAATGGTGTATCAAATGGTCTTGTACCAATGTT 918261 Query 110699 AAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTC 110755 | |||| | ||| | || || | |||||| ||||||| ||||| | | ||| | Sbjct 918260 ACGAGTTTACAATAATACAGCTAGATATGTTGATCAAGGAGGTAATAAGCGCCCTGGAGC 918201 Query 110756 ATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAA 110815 ||||| ||||| | ||||| |||||| | |||||||||||||||||||| | || Sbjct 918200 TTTTGCAGTCTATTTGGAACCGTGGCATGCCGATATATTTGAATTCTTAGATTTAAAGAA 918141 Query 110816 AAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875 ||| ||| |||||| | | || | || | ||||||||| ||||||| | || Sbjct 918140 AAACACTGGAAAAGAAGAAGTACGTGCCAGGGAACTTTTTTATGCATTGTGGATACCTGA 918081 Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTC 110935 | | ||||||||| | ||| || | ||||| | ||| | ||||||||||||||| || Sbjct 918080 TCTTTTCATGAAAAGAGTTGAAAATGATGGCGTATGGACCCTTATGTGTCCTCATGATTG 918021 Query 110936 TCCTGGTCTATCTGA-TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAA 110994 || || || |||| ||| | |||||||| |||||| | | || |||| |||||||| Sbjct 918020 CCCAGGGTTAGCTGACTGT-TGGGGAAAAGAATTTGAATCCTTATATGAAACATATGAAA 917962 Query 110995 AAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT 111054 ||||| | ||| |||||| | || |||| |||||| ||| | ||| Sbjct 917961 AAGAAAATAGATTTGTAAAACAAGTAAGGGCACAAGTTCTTTGGAAAGCAATAATAGAAG 917902 Query 111055 CACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA-TCATATTAATCGCAAATCT 111113 | ||||| || ||||| ||||| || || || | |||||| |||| |||| | ||| | Sbjct 917901 CTCAAGTAGAGACTGGTACTCCATACATGTTATTTAAAGATTCAT-GTAATAGAAAAAGT 917843 Query 111114 AATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 ||||| | |||||||| || || || | |||||| ||||| Sbjct 917842 AATCAGAAAAATTTAGGTACCATAAAATGTAGTAACCTGTGC 917801 >seq749 Length=8107424 Score = 116 bits (128), Expect = 9e-21 Identities = 134/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | || ||| | |||||| | || || |||||| |||||||| ||| | ||| || Sbjct 6029762 GTTATATTTAATCGTCAACCAACTCTTCACAAAATGAGTATGATGGGTCACAGAGTTAAG 6029703 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGT-GCTTGTACGCCTTATAATGCGGA 305448 ||| | || | | || ||||| | ||| | ||| || | | ||||| ||||| || Sbjct 6029702 GTACTTCCTTGGTCAACGTTTCGTATGAATTTGAGTTGCACAT-CACCTTACAATGCTGA 6029644 Query 305449 TTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTACAATGACTGAA 305506 |||||||||||||||||||||| ||||||| |||||||||| || |||| | ||||| Sbjct 6029643 TTTTGATGGAGATGAAATGAATTTGCATGTTCCTCAATCAATGGAAACAAGGGCTGAA 6029586 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 304988 AAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCA 305047 ||||| ||||| || | |||||||| ||||||||||| ||||||||||| || || Sbjct 6030098 AAAGGAAAAGAAGGAAGAATTCGAGGAAATCTAATGGGGAAACGTGTTGACTTCTCAGCT 6030039 Query 305048 AGAAGTGTAATCACACCTGATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCCAATTGA 305106 || | |||||||||||||| || || ||| || | || || | || ||||| | Sbjct 6030038 AGGACAGTAATCACACCTGA-TCCAAATTTACGTATAGATCAAGTTGGGGTTCCCAGATC 6029980 Query 305107 AATTGCTTTAAAACTAACATTTCCAGAG 305134 ||||||| ||| | ||||| |||||| Sbjct 6029979 AATTGCTCAAAATATGACATTCCCAGAG 6029952 >seq756 Length=6248677 Score = 86.0 bits (94), Expect = 1e-11 Identities = 169/248 (68%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 278654 TGGGAAATTGCTCTATCACCTTCTGA---GGAATTTAAACAAGTATCTTTTGTTAATGGT 278710 ||||| | ||||| || ||||| || ||| ||||||| ||||||||||| | Sbjct 5372579 TGGGAGGTCGCTCTTACAATATCTGACATGGGATTCCAACAAGTTTCTTTTGTTAACTCT 5372520 Query 278711 ATTAATACTTCAAAAGGTGGAAAACATGTTGATTATGTTCTTAATAAGATTGTGAAGAAG 278770 ||| || |||||||||| |||||||||||| || | | | | || ||||| Sbjct 5372519 ATTGCAACCACAAAAGGTGGTAAACATGTTGATACAGTAGCTGACAGTGTGGTCAAGAAT 5372460 Query 278771 ATTTCAGAGATAATTGAGAAGAAGGA-AAAGATTAAGGTAAAATCAAATAATA-----TT 278824 ||| ||| || || | |||||| | |||| | | ||| || ||| ||| || Sbjct 5372459 GTTTTAGAAGTACTTAAAAAGAAGAATAAAGGTGGTGTTAATATTAAACCATACCAAGTT 5372400 Query 278825 AAAGAACACTTGTTTATATTTGTAAATTGTTTGATTATAAATCCTTCATTTGATTCGCAA 278884 ||| ||| ||| ||||||| || || ||||| |||| ||| | |||||||| ||| Sbjct 5372399 AAAACTCACATGTGGTTATTTGTCAACTGCCTGATTGTAAACCCTACCTTTGATTCACAA 5372340 Query 278885 ACGAAAGA 278892 || | ||| Sbjct 5372339 ACTACAGA 5372332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186151899926943