Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq466 129 1e-24 seq747 127 5e-24 seq8861 122 2e-22 seq5054 102 2e-16 >seq466 Length=1632705 Score = 129 bits (142), Expect = 1e-24 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || ||||| |||||| || || || || || || || ||||| |||||| ||| ||| Sbjct 1583506 CAAATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAAGCTTCCGAC 1583447 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| ||| || ||||| || ||||| ||| || ||| || Sbjct 1583446 ACTATCGAAAATGTCAAAGCTAAA-ATCCAAGACAAGGAAGGTATTCCTCCAGACCAACA 1583388 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || ||||| ||||| || || || |||||||| | ||| | | || || ||| | Sbjct 1583387 ACGTCTCATCTTTGCCGGGAAACAATTAGAAGATGGCCGCACTCTTTCAGACTATAACAT 1583328 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||| || || |||||||| |||||||||||| || Sbjct 1583327 CCAGAAAGAATCCACACTTCACCTGGTTTTGAGACTTAGA 1583288 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || |||||||||||| |||||||| || || |||||||||| |||||||| | | ||| Sbjct 1583288 TCTAAGTCTCAAAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTGAAAGAGT 1583347 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||| | || || ||||| ||||| || |||||||| Sbjct 1583348 GCGGCCATCTTCTAATTGTTTCCCGGCAAAGATGAGACGTTGTTG 1583392 >seq747 Length=8313734 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || ||||| ||||| |||||||| ||| |||||| Sbjct 5397209 CAGATCTTTGTCAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATCTGAC 5397150 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| || |||||| || ||||| |||||| ||||| || Sbjct 5397149 ACCATCGAAAATGTGAAAGCCAA-GATTCAGGACAAAGAGGGAATTCCTCCGGATCAGCA 5397091 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | ||||| || || || ||| | |||||||| | || | | || |||||| | Sbjct 5397090 GCGATTGATCTTTGCGGGCAAACAGCTTGAAGATGGCCGTACACTATCTGACTACAACAT 5397031 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| |||||| | || | ||||||||||| || Sbjct 5397030 CCAGAAAGAATCTACTTTACATTTGGTTTTGAGACTCCG 5396992 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| ||||| |||||||| ||| |||||| Sbjct 5397893 CAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATCTGAC 5397834 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| || |||||| || ||||| |||||| || || || Sbjct 5397833 ACCATCGAAAATGTGAAAGCCAA-GATTCAGGACAAAGAGGGAATTCCCCCAGATCAGCA 5397775 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | || || || || || ||| | |||||||| | || || | || |||||| | Sbjct 5397774 GCGATTGATTTTTGCTGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTACAACAT 5397715 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| |||||||| || | ||||||||||| || Sbjct 5397714 CCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCG 5397676 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| ||||| |||||||| ||| |||||| Sbjct 5398349 CAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATCTGAC 5398290 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| || |||||| || ||||| |||||| || || || Sbjct 5398289 ACCATCGAAAATGTGAAAGCCAA-GATTCAGGACAAAGAGGGAATTCCCCCAGATCAGCA 5398231 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | || || || || || ||| | |||||||| | || || | || |||||| | Sbjct 5398230 GCGATTGATTTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTACAACAT 5398171 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| |||||||| || | ||||||||||| || Sbjct 5398170 CCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCG 5398132 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| ||||| |||||||| ||| |||||| Sbjct 5398805 CAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATCTGAC 5398746 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| || |||||| || ||||| |||||| || || || Sbjct 5398745 ACCATCGAAAATGTGAAAGCCAA-GATTCAGGACAAAGAGGGAATTCCCCCAGATCAGCA 5398687 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | || || || || || ||| | |||||||| | || || | || |||||| | Sbjct 5398686 GCGATTGATTTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTACAACAT 5398627 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| |||||||| || | ||||||||||| || Sbjct 5398626 CCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCG 5398588 Score = 118 bits (130), Expect = 3e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| ||||| | ||||| ||| |||||| Sbjct 5399261 CAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACACTAGAAGTTGAAGCATCTGAC 5399202 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || |||||||| |||||| || ||||| |||||| ||||| || Sbjct 5399201 ACCATTGAGAATGTGAAAGCAAA-GATTCAGGACAAAGAGGGAATTCCTCCGGATCAGCA 5399143 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || || ||| | |||||||| | || | |||| |||||| | Sbjct 5399142 GCGGTTGATCTTTGCGGGCAAACAGCTTGAAGATGGCCGTACACTATCCGACTACAACAT 5399083 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| |||||||| ||| | ||||||||||| || Sbjct 5399082 CCAGAAAGAATCTACTCTGCACTTGGTTTTGAGACTGCG 5399044 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || |||||||| |||||||| ||| ||| Sbjct 4903219 CAGATCTTTGTGAAAACTCTAACCGGCAAGACCATCACTTTAGAAGTGGAGCCTTCGGAC 4903278 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||| ||||| |||||||||||| || || || Sbjct 4903279 ACAATTGAGAATGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAG 4903338 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| ||||||| ||| | || ||| | || |||||| | Sbjct 4903339 CGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAACATT 4903398 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || || || ||||| || | ||||| Sbjct 4903399 CAAAAAGAATCCACACTCCATCTTGTACTGCGTCTTCG 4903436 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || |||||||||||||| ||| ||| |||||| |||| Sbjct 4903459 AAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCTTCGGACACAATCGAGAAC 4903518 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||||||| || || || | || ||||| Sbjct 4903519 GTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAGCGTCTCATCTTT 4903578 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| ||||||| ||| | || ||| | || ||||| | || || || ||| Sbjct 4903579 GCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAATATTCAAAAGGAATCT 4903638 Query 206365 ACTCTTCA 206372 || || || Sbjct 4903639 ACACTCCA 4903646 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| ||||| || ||||| ||| |||||||| | ||| Sbjct 5397425 AAAACACTTACCGGTAAAACCATCACATTAGAAGTTGAAGCATCTGACACCATTGAAAAT 5397366 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || ||||| |||||| ||||| || || | ||||| Sbjct 5397365 GTGAAAGCCAA-GATTCAGGATAAAGAGGGAATTCCTCCGGATCAGCAGCGATTGATCTT 5397307 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || ||| | ||||| || | || | | || |||||| |||||||||| || Sbjct 5397306 TGCAGGCAAACAGCTTGAAGACGGCCGTACACTATCTGACTACAACATCCAGAAAGAATC 5397247 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| || | ||||||||||| || Sbjct 5397246 TACTCTGCATTTGGTTTTGAGACTGCG 5397220 >seq8861 Length=554 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| ||||| |||||||| ||| |||||| Sbjct 237 CAGATTTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATCTGAC 178 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| || |||||| || ||||| |||||| || || || Sbjct 177 ACCATCGAAAATGTGAAAGCCAA-GATTCAGGACAAAGAGGGAATTCCCCCAGATCAGCA 119 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | || || || || || ||| | |||||||| | || || | || |||||| | Sbjct 118 GCGATTGATTTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTACAACAT 59 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| |||||||| || | ||||||||||| || Sbjct 58 CCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCG 20 >seq5054 Length=501 Score = 102 bits (112), Expect = 2e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || ||||| | || || ||| ||| || Sbjct 211 CAGATCTTTGTAAAAACTCTAACTGGCAAGACAATCACCCTTGAGGTTGAAGCTTCAGAT 270 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || ||||||||| || || || || ||||| ||| || ||| || Sbjct 271 ACAATTGAAAATGTCAAAGCAAAA-ATCCAGGACAAGGAAGGCATTCCTCCAGACCAACA 329 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||||| |||||||| || ||||| ||||||||||| | || || | || ||||| | Sbjct 330 GAGACTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCAGACTACAATAT 389 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| ||||| || ||| | || | | |||||| Sbjct 390 TCAGAAAGAATCTACCCTGCACTTAGTACTACGTCTTCGA 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181162679820423