Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq472 298 5e-76 seq466 271 7e-68 seq747 141 8e-29 seq5054 84.2 2e-11 >seq472 Length=1464009 Score = 298 bits (330), Expect = 5e-76 Identities = 800/1204 (66%), Gaps = 28/1204 (2%) Strand=Plus/Plus Query 59923 AAAGTCGTTGCCGCATATTTTGTCGAATGGGGTGTTTATCCTAGAAATTTTCCTGTAGAT 59982 ||||| || | ||| || || |||||||||||||| ||||||||||| || ||||| || Sbjct 407334 AAAGTGGTGGGCGCTTACTTCGTCGAATGGGGTGTGTATCCTAGAAAGTTCCCTGTGGAC 407393 Query 59983 CGAGTGCCCACTCCTAATCTATCGCATATTCTATACGGATTTATTCCGATATGCGGCGGC 60042 || || || ||| || || | ||| | || ||||| || |||||||| || || || Sbjct 407394 CGCGTTCCGGTTCCGAACCTGACTCATTTGCTCTACGGCTTCATTCCGATTTGTGGTGGT 407453 Query 60043 GACGGTATCAACGACAGTCTTAAAACCATAACCGGTAGTTTCGAAGCGCTTCAGCGATCG 60102 || || ||||| |||||| | ||| || || ||||| |||| || || || || Sbjct 407454 GATGGCATCAATGACAGTTTGAAAGAAATTGAGGGCAGTTTTCAAGCACTACAACGTTCA 407513 Query 60103 TGTTCAGGTCGAGACGACTTTAAAGTATCAATTCACGATCCATGGGCCGCCGTCCAGAAA 60162 || || || || ||||| || || || || |||||||| ||||| ||| | |||||| Sbjct 407514 TGCAGCGGCCGTGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAA 407573 Query 60163 CCCCAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTCGGACAATTAATG 60222 || ||||| | || | | |||||||| || ||||||||||| ||||| || | ||| Sbjct 407574 CCTCAAAAGGGATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGATG 407633 Query 60223 GCAGCC-AAACTGGCAAATCCCCACATCAAAGTGTTGCCCTCGATCGGAGGTTGGACTCT 60281 ||| |||| || ||| | | | || || || || || || || || ||||| | Sbjct 407634 -CAGTTGAAACAAGCGAATACTGGCTTAAAGGTCTTACCTTCAATTGGTGGCTGGACATT 407692 Query 60282 ATCCGATCCGTTCTTTTACTTTCACGATACGGATAAACGAAAGATTTTTGTAGATTCTGT 60341 ||||||| ||||| | ||| ||| | || || | ||| || | || || Sbjct 407693 GGCCGATCCCTTCTTCTTCTTCACCGACAAAACCAAGCGTGATCGTTTCGTTGCCTCCGT 407752 Query 60342 CGTGGAGTTTCTACAGACGTGGAAATTTTTCGACGGTGTCGACATCGACTGGGAGTTTCC 60401 || || || || || ||||| || ||||| ||||||||||| || |||||||| || Sbjct 407753 GAAAGACTTCCTCCAAACTTGGAAGTTCTTCGATGGTGTCGACATTGATTGGGAGTTCCC 407812 Query 60402 CGGCGGAAAAGGTGCCAATCCCAACGTAGGCGACGCCGAACGCGATCGCGAAACGTACAC 60461 || || ||||| || || || | | || | || || | || || | ||| || Sbjct 407813 AGGTGGCAAAGGCGCTAACCCTGATCTCGG-TAGTCCTAAAG---ACG-GAGATGTATAC 407867 Query 60462 CAT--TCTGTTGAAAGATTTACGCGAGGCGCTAGATCGATTAACCCTCGAAACGAATCGA 60519 | || |||| || ||||| | | | ||| | | || || | || Sbjct 407868 GTTCAGCTCATGAAGGAATTACGTCAAATGTTGGATGAGCTGGCGGCTGAGACTGGTAGA 407927 Query 60520 ACGTACGAGTTGACCAGCGCAATTAGCGCCGGCGATGACAAAATCGCCGTCGTCGACTAC 60579 || |||||||||||| || || |||||||| ||||| ||| ||||| ||||| Sbjct 407928 ACTTACGAGTTGACCTCTGCCATCAGCGCCGGTTGGGACAAGATCCAAGTCGTGAACTAC 407987 Query 60580 ACCGCTGCTCAAGAATATTTAGATTTAAtttttttGATGACGTACGATTTTAAAGGAGCC 60639 | | || || |||| | || || || | |||| ||||| || || || ||| Sbjct 407988 AAGGAAGCCCAGAAATACATGGACCATATCTTCGTTATGAGTTACGACTTCAAGGGTGCC 408047 Query 60640 TGGTCGAATAACGATCTGGGCTATCAGACTACTCTATACGCTCCTTCGTTTAATCCTAAA 60699 ||||| || || |||||| | |||||| ||||||| ||||| || | | |||||| Sbjct 408048 TGGTCTAACGACACTCTGGGACACCAGACTGCTCTATATGCTCCATCTTGGAGTCCTAAG 408107 Query 60700 GAACATTATACTACCGATTTTGCCGT-TC--GTGCTCTACTCAAGCAAAAAGTCGAGAAT 60756 ||| ||| || ||||| || | || || || | || || | ||| ||| || Sbjct 408108 GAAACTTACACCACCGACTT--CGGTATCAGGTAC-CTGCTGACCCAAGGTGTCCAGCCC 408164 Query 60757 aaaaaaaTTATTGTCGGCGTGGCCATGTACGGTCGCGGCTGGACCGGCGTAAGCGATTTT 60816 ||||| | ||||||| || || |||||||| || || ||||| || || ||| | Sbjct 408165 AAAAAGCTGGTTGTCGGTGTTGCTATGTACGGACGTGGTTGGACTGGAGTTCACGACTAC 408224 Query 60817 GTTGACGATAATAATCCATTTTCCGGAACGGCCAAGGGACCGGTCAAAGGAACATGGGAA 60876 ||||| ||| || || | ||| || || || || || |||||||| ||| | Sbjct 408225 AACGACGA-CATA--CCCTTCACTGGAGTTGCTAATGGTCCAGTTAAAGGAACTTGGCAG 408281 Query 60877 GACGGAGTCGTCGACTATAGAGAGATTTTCAATAATTTCGTCGCCAATAACCCGATGG-- 60934 ||||| || || |||||||| ||||| | ||| || | || ||| |||| Sbjct 408282 GACGGTGTGGTGGACTATAGGGAGATCGTGAATGGCATC-ACTTCAGGAAC---ATGGCA 408337 Query 60935 --AATATTACGATTCCGTTGCAAAAGCGGCGTACGTCTTTAATAACTCGACCGGCGAGCT 60992 | | ||||||| ||||| |||| | ||||| | ||| | |||||||| || Sbjct 408338 GTACTTTTACGATAAAGTTGCTCAAGCTCCATACGTGTGGAATCCTACAACCGGCGATCT 408397 Query 60993 CATCACTTACGACAATCCTCGGTCGGTTCTGGATAAAGCAAAATATGTATTGGACTAT-A 61051 | ||||| || | | | || ||| | || || | ||||| || | || || | Sbjct 408398 GGTGACTTATGATGACGCAAGATCAGTTATTGAGAAGGGGAAATACGTGAGGAACAATAA 408457 Query 61052 GCTTGGGTGGTTTGTTCGCTTGGGAGATCGACGCCGACAACGGATTACTTCTAAACGCCA 61111 |||| ||||| ||||||||||||| || ||||| ||||| || | || ||||| | Sbjct 408458 GCTT-GGTGGACTGTTCGCTTGGGAAATAGACGCTGACAATGGCGATATCCTGAACGCTA 408516 Query 61112 TGAA 61115 |||| Sbjct 408517 TGAA 408520 >seq466 Length=1632705 Score = 271 bits (300), Expect = 7e-68 Identities = 928/1426 (65%), Gaps = 43/1426 (3%) Strand=Plus/Plus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 ||| || ||||| || | ||| || || ||||| |||| || ||| ||||| || || || Sbjct 916832 CACAGTAAATTGTATGGCATTGGCTGCCGGTTTTGTTCGCAAATAATACATCCCTGTTTT 916891 Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757 ||||||| | | ||| ||||| ||| ||||| | || || ||| |||| || || Sbjct 916892 TAAACCCATTTTCCATGAATAGAAATGAATAGAAGTTAATTTTCCGTAGTTCGGTTCAGC 916951 Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817 ||| | ||| | ||||| || ||||| || ||| ||| || || || ||||| || Sbjct 916952 AACGTGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCCAT-TT 917010 Query 136818 CAATAGTACTTTTTGCTTAA-TTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCG 136876 || || |||| || || |||||||| | || ||| | | ||| | | | | | Sbjct 917011 GTATTGTTGTTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCCCTTATTTCTGTAG 917070 Query 136877 GAATTTCATCGATATTCTGTACAGATCCGTTGTTTT---TGATGATTTTCATCATGAGAT 136933 | || |||||||| |||| |||||| || || | | |||| || |||| | Sbjct 917071 GTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCATTTCCT 917130 Query 136934 CAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACG-AGATGCTGATTTACTACTTGA 136992 || | | | | |||| ||| | | | | ||| | | ||| |||||||| |||||| Sbjct 917131 CATCCCATAAATC--TGCT-TCTGTCAAATCA-CGAAGTAAATGATGATTTACAACTTGA 917186 Query 136993 TATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCG 137052 |||| || |||| || | | | || | |||| |||||| ||||| || ||||| Sbjct 917187 AATTCTCCAGATAAAACACGTCTTTGATAAATATTAGAAGTGAAGGGCTCAAAAGATTCA 917246 Query 137053 TTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTC 137112 || || || |||||||| || || | || || ||||| || | ||| | ||||| Sbjct 917247 TTATTTCCTAAAATCTGAGCTGTTGAGGCAGTGGGCATTGGGGCTACCAAAAGAGAATTA 917306 Query 137113 CGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGAT-TGTTCGA 137171 || | ||| || ||| | | || || | | |||||| ||| | || |||| || Sbjct 917307 CGAAGACCATGCTTGGCAATGTTTTCTTTTAAAGCAGTCCAGTCCCATAAATCTGTTGGA 917366 Query 137172 TTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCATA 137231 || | ||||||||| || |||| || | || ||||||||||| | | || | || Sbjct 917367 TT----TTTATTCCACATTTCGTACTGTAATATGCCTCGACTTGCAGGGCATCCTTCGTA 917422 Query 137232 AGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAGTA 137291 | ||||| ||| | | || || |||||| ||| ||||||| |||||||| Sbjct 917423 TGTTTCATACACTCCATACTTTTCTGCTAGTTCACAACTTGCCTCTAGTGCTCCATAGTA 917482 Query 137292 AATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATATC 137351 ||||||||| | |||| | ||| |||| |||||||| | || ||||| || | | Sbjct 917483 AATAGTTTCAAATATTTGTTGATTTAATTTAATAGCTTCTGGACTTTCGTAAGGTAAACG 917542 Query 137352 CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAAA 137411 || || | |||||||| ||||| ||||||| ||| || || |||||||| ||| ||| Sbjct 917543 CATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCTATGTCTAAG 917602 Query 137412 ATTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTATTGAGATT 137471 ||| ||| ||| || || || ||| | ||| | || || ||| |||| | ||| Sbjct 917603 ATTAGATTTTTTTGCTTCCGGAACAGGGTAATAATTTACATCAATGATTTTATTCAAATT 917662 Query 137472 GTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCGAAGCTTTTAGACTGTTT 137531 | || | | | | |||| | | | ||| | ||| ||| | ||| Sbjct 917663 TTCTGTTATAGTTTTAGTAACTTCTTTTA--ATTTC----TTAAAG---TTATATGTTTT 917713 Query 137532 GTT------AGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTCTGT 137585 ||| | |||| |||| | || |||||||||||||||||||| ||| ||| Sbjct 917714 GTTATCATCAACAAACATATTTAGCGCTATAGAGGCTAAGTTGCATACTGCCACTTC--- 917770 Query 137586 ATTGTC-GCTG--TATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAA 137642 || || | || |||| || ||||| | ||| || || || | || || || Sbjct 917771 ATCATCAGATGTATATTCAACTATTTCAGTGCACAGGTTACTACATTTTATGGTACCTAA 917830 Query 137643 ATTCTTTTGATTGTTTTTCTCGTTGACGTG-ATCTTTATATATCATATACGGAGTTCCGG 137701 ||| || ||||| |||| || | || || ||||||| ||| ||| || ||||| || | Sbjct 917831 ATTTTTCTGATTACTTTT-TCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAG 917889 Query 137702 TTTCGACTTGAGTCTCAACAATTTTTCTGTGAAGATCCAACGCCATAATTTGTTCTCTAA 137761 | || ||||||| || | ||| | | |||| | ||| | | ||||| | || Sbjct 917890 TCTCTACTTGAGCTTCTATTATTGCTTTCCAAAGAACTTGTGCCCTTACTTGTTTTACAA 917949 Query 137762 ACTTGCCTTGAGCTTCAAAACTTTCGTATAGCCGTTTAAATTTTTCGCCCATAACAATC- 137820 | | || |||| | |||| |||| || ||||| || ||| |||| || Sbjct 917950 ATCTATTTTCTTTTTCATATGTTTCATATAAGGATTCAAATTCTTTTCCC-CAACAGTCA 918008 Query 137821 GTTAGACCCGGACACTCGTCGGGACACATCAACGACCATTTTCCTCCCGTCCTAACCCTT 137880 | || || || || || | |||||||| | | |||| || | | ||| ||| Sbjct 918009 GCTAACCCTGGGCAATCATGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTT 918068 Query 137881 TCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGCCTTCATATCTTCG 137940 | |||||| ||| ||| |||| | ||| ||| ||| || | || | ||||| Sbjct 918069 TTCATGAAAAGATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGTACTTCTTCT 918128 Query 137941 GCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAGGCTCGATA 138000 || | || |||||||| || || ||| ||||| |||||||| || || | | Sbjct 918129 TTTCCAGTGTTTTTCTTTAAATCTAAGAATTCAAATATATCGGCATGCCACGGTTCCAAA 918188 Query 138001 TAGACGGCCATAGCTCCTTTTC---TTTTACCGCCTTGATCCACAT 138043 ||||| || | |||||| | | ||||| |||||||| |||| Sbjct 918189 TAGACTGCAAAAGCTCCAGGGCGCTTATTACCTCCTTGATCAACAT 918234 >seq747 Length=8313734 Score = 141 bits (156), Expect = 8e-29 Identities = 175/237 (74%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 25168 AAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA 25227 || || |||||| | ||||||||||| | || || ||| | || || | |||||||| Sbjct 5399727 AACCACCATGCAGATTTTTGTAAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGA 5399668 Query 25228 AGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCC 25287 ||| ||| || || || | |||||| ||||||| || |||||||| || || || Sbjct 5399667 AGCATCCGACACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCC 5399608 Query 25288 CGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGA-TGATAGAAATGTCAGCG 25346 |||||||| |||| |||| || || |||||||| ||||| || || || | || Sbjct 5399607 AGATCAGCAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGGACAT-TATCCG 5399549 Query 25347 ATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||||||||||||||||| || | ||||| || ||| | ||||||| |||| Sbjct 5399548 ATTACAATATTCAAAAAGAATCTACTCTCCATTTGGTATTACGTCTGAGAGGTGGAA 5399492 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || ||||| | |||||||| | ||||| | ||||| ||||| Sbjct 4903443 CATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCTTC 4903502 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || |||||| | || || || || || ||||| || || || || ||||| Sbjct 4903503 GGACACAATCGAGAACGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCA 4903562 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 || | ||||| | | ||||| || || ||||| | | | |||||| | ||| Sbjct 4903563 ACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAG--ACTAC 4903620 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||||||| ||||| || | |||||||||||| | | ||||||||| Sbjct 4903621 AATATTCAAAAGGAATCTACACTCCATTTAGTGTTACGTCTACGAGGAGGAA 4903672 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| |||||| | ||||| ||| | ||||| | ||||| ||||| Sbjct 5397441 CATGCAAATTTTTGTGAAAACACTTACCGGTAAAACCATCACATTAGAAGTTGAAGCATC 5397382 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| || ||| ||||||||||| || || || ||||| Sbjct 5397381 TGACACCATTGAAAATGTGAAAGCCAAGATTCAGGATAAAGAGGGAATTCCTCCGGATCA 5397322 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || | || | | |||||||| || ||||| | | | | || ||||| Sbjct 5397321 GCAGCGATTGATCTTTGCAGGCAAACAGCTTGAAGACGGCCGTACACTATCTGACTACAA 5397262 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || |||||||| || | ||||| || || ||| || | || || Sbjct 5397261 CATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGG 5397214 >seq5054 Length=501 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||||||||| |||| || || | ||||| | || || ||||| Sbjct 208 ATGCAGATCTTTGTAAAAACTCTAACTGGCAAGACAATCACCCTTGAGGTTGAAGCTTCA 267 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| |||||| || || || || || || || || || Sbjct 268 GATACAATTGAAAATGTCAAAGCAAAAATCCAGGACAAGGAAGGCATTCCTCCAGACCAA 327 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 || ||||| || | || ||||| ||| | ||||||| | | | ||| || |||| Sbjct 328 CAGAGACTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCA--GACTACA 385 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||| |||||||| ||| | || ||||| || | | ||||||| Sbjct 386 ATATTCAGAAAGAATCTACCCTGCACTTAGTACTACGTCTTCGAGGAGG 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444852585776160