Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq466 677 0.0 seq483 140 4e-28 >seq466 Length=1632705 Score = 677 bits (750), Expect = 0.0 Identities = 1225/1778 (69%), Gaps = 24/1778 (1%) Strand=Plus/Plus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 ||||||| ||||| || |||| || ||| |||||||| || | ||| ||||| || Sbjct 916827 TTATCCACAGTAAATTGTATGGCATTGGCTGCCGGTTTTGTTCGCAAATAATACATCCCT 916886 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 ||||| | ||| | ||||| |||||||| ||| |||| ||| || | || Sbjct 916887 GTTTTTAAACCCATTTTCCATGAATAGAAATGAATAGAAGTTAATTTTCCGTAGTTCGGT 916946 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544 || || | || ||||| | |||||||||||||| || |||||||| | ||| || ||| Sbjct 916947 TCAGCAACGTGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCC 917006 Query 68545 ATTTTTATAATACTCTTTTGA--GGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATAT 68602 |||| ||| | | |||||| | ||||||||||| |||||| | | | | || | Sbjct 917007 ATTTGTATTGT--TGTTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCCCTTATTT 917064 Query 68603 CATCTGGAAGGCT--CG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGA 68659 | || | || || ||||||| || |||||| || | |||||| | ||| || | Sbjct 917065 CTGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCA 917124 Query 68660 TCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTT 68719 | || |||| ||| || | | || || ||| | | ||| | ||| |||| || | || Sbjct 917125 TTTCCTCATCCCATAAATCTGCTTCTGTCAAATCACGAAGTAAATGATGATTTACAACTT 917184 Query 68720 GAAATTCCCCAGATAACAC---TCTACGAGTGTAAATATTACTGGTATATGGTTCCACAG 68776 ||||||| |||||||| || ||| || ||||||||| || | || || | || Sbjct 917185 GAAATTCTCCAGATAAAACACGTCTTTGA---TAAATATTAGAAGTGAAGGGCTCAAAAG 917241 Query 68777 ATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAAC 68836 ||||||||||||| | ||| ||||| ||||| ||||| ||||| || || ||||| | | Sbjct 917242 ATTCATTATTTCCTAAAATCTGAGCTGTTGAGGCAGTGGGCATTGGGGCTACCAAAAGAG 917301 Query 68837 TATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAG 68896 ||| | ||||||||| | || || ||||||| | |||| ||||| | ||| | Sbjct 917302 AATTACGAAGACCATGCTTGGCAATGTTTTCTTTTAAAGCAGTCCAGTCCCATAAATCTG 917361 Query 68897 ATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTAT 68956 ||| |||||| | ||||| |||| || || ||||||| |||| | | Sbjct 917362 TTGGATTTTTATTCCACATTTCGTACTGTAATATGCCTCGACTTGCAGGGCATCCTTCGT 917421 Query 68957 ATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAAT 69016 |||||||||| ||| | || ||| |||||||||||||||||||||| ||| || || | Sbjct 917422 ATGTTTCATACACTCCATACTTTTCTGCTAGTTCACAACTTGCCTCTAGTGCTCCATAGT 917481 Query 69017 AAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT-GCTTCTAGACTATCGAATGGATAA 69075 |||| ||||| || || | | ||| | || | | |||||| |||| ||| | || || Sbjct 917482 AAATAGTTTCAAATATTTGTTGATTTA-ATTTAATAGCTTCTGGACTTTCGTAAGGTAAA 917540 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | | | |||||| ||||| || | || ||||| || || || |||||||||||||| Sbjct 917541 CGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCTATGTCTA 917600 Query 69136 TTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGA 69195 ||| || ||| ||||| |||| ||| |||||||| | ||| || |||||||| | | Sbjct 917601 AGATTAGATTTTTTTGCTTCCGGAACAGGGTAATAATTTACATCAATGATTTTATTCAAA 917660 Query 69196 TTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGT---CCATCT 69252 ||| || |||| || || |||| ||| ||| | | || | ||| Sbjct 917661 TTTTCTGTTATAGTTTTAGTAACTTCTTTTAATTTCTTAAAGTTATATGTTTTGTTATCA 917720 Query 69253 ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTT 69312 |||||||||||| || |||| ||| |||| || || ||||| || |||| | | | Sbjct 917721 TCAACAAACATATTTAGCGCTATAGAGGCTAAGTTGCATACTGCCACTTCATCATCAGAT 917780 Query 69313 GCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGA 69372 | ||||| | ||| || || || || ||||||||||| || || || | ||||| |||| Sbjct 917781 GTATATTCAACTATTTCAGTGCACAGGTTACTACATTTTATGGTACCTAAATTTTTCTGA 917840 Query 69373 TTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGA 69432 ||||| ||| | ||||| | || || | | || | ||||||||||| || | ||| Sbjct 917841 TTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTACTTGA 917900 Query 69433 GATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAA--CGCTTCT 69490 | ||| || || | |||||||| || || ||| | || || || | || | Sbjct 917901 GCTTCTATTATTGCTTTCCAAAGAACTTGTGCCCTTACT--TGTTTTACAAATCTATTTT 917958 Query 69491 CTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAG 69550 ||||||||||| | ||||| ||| ||||| | ||||||| ||| | || || | Sbjct 917959 CTTTTTCATATGTTTCATATAAGGATTCAAATTCTTTTCCCCAACAGTCAGCTAACCCTG 918018 Query 69551 GACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATA 69610 | || |||| |||||||| | | ||| || |||||| | ||||| |||||| || | Sbjct 918019 GGCAATCATGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCATGAAAA 918078 Query 69611 GATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAt 69670 |||| || ||||| | || ||| || || |||| | |||||| ||||| || | Sbjct 918079 GATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTTCCAGTGT 918138 Query 69671 tttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCA 69730 |||| || | ||| | || || | ||||| | |||||| ||||| | ||| | || | Sbjct 918139 TTTTCTTTAAATCTAAGAATTCAAATATATCGGCATGCCACGGTTCCAAATAGACTGCAA 918198 Query 69731 TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTC 69790 |||| || || ||||| ||||| ||||| | ||||| || || ||||| || |||| Sbjct 918199 AAGCTCCAGGGCGCTTATTACCTCCTTGATCAACATATCTAGCTGTATTATTGTAAACTC 918258 Query 69791 TCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG 69850 | ||| || | || |||||| ||| |||||||||||| | |||||| | ||| | | Sbjct 918259 GTAACATTGGTACAAGACCATTTGATACACCATTTGTTCCTGCTATATAAGTACCTTTAG 918318 Query 69851 CGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAAC 69910 | | ||| | | | ||| ||||| ||||| |||||| || | |||||| Sbjct 918319 CCCTTATACAGTGGACATGGACACCAATTCCACCTGCAGATTTAGATATCAAAGCACACT 918378 Query 69911 GTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGC 69970 | || || || || || || || || ||||| |||||| |||| | |||||||| Sbjct 918379 GCTTTAAGGTATCGTAAATTCCTTCAATGCTGTCATCTTTCATTGCCACTAGAAAACATG 918438 Query 69971 TAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACC 70030 || | ||| | || |||| | || ||||| || || || |||||||| Sbjct 918439 ATGATAGTTGGGGGCGTGGAGTTGCAGCTGAGAATAAGGTTGGGCTGGCATGAGTGAAAT 918498 Query 70031 ATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATT 70089 |||| |||||||| | |||||||| | || |||| || ||||| ||| ||||||| Sbjct 918499 ATTTCTCAGAAAGTAAGTTGTATGTATTTATGGCTGCATCAATATCTTCAC-CATGAATT 918557 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 || || | || ||||||| |||||| ||||||||||| Sbjct 918558 CCAATTGACACTCGCATCAGCATATGTTGAGGTCGTTC 918595 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTAT 70194 ||||| ||||||||||| | ||||| || | ||||||||||||||||| || ||| Sbjct 919317 TTATTGTTTATTTTCAATAAATATGAGCGCTCTAAAGTTTTAAACCCAAAATGATTATAT 919376 Query 70195 GAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATA 70254 |||||||| || || | |||| |||||| || | | || |||| || |||||||| Sbjct 919377 TTGAAGTCTCTGTCATACACAATAGCAGAATCTAATCTTTCTTTATGGTTCATAACTATA 919436 Query 70255 TCCATAACAGTAGGTGAGATA--ATCGGAGATCGTTTACCATTTTTAGGATTAACATAGT 70312 | |||| | | | ||||| || || | | || | | | ||||||||| || Sbjct 919437 T-TATAA-TGAAATTCAGATATCATTGGTGCCCTCTTCTTAGTGTGTGGATTAACAATGT 919494 Query 70313 TGAATAAATCTTCCATTACATC 70334 || ||||||| ||| ||||| Sbjct 919495 CAAACAAATCTTTCATAACATC 919516 >seq483 Length=1310704 Score = 140 bits (154), Expect = 4e-28 Identities = 169/228 (74%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||| | ||| ||| ||||| ||||| ||||| || || ||||||| Sbjct 173492 CCTCATCCCTGGAAATAAGTTCATTACTGAATGTAAGTCCCGGCATAAGGCCCCGCTTTT 173433 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| || |||| ||||||| || || || ||||| |||||||| |||||||| | Sbjct 173432 TGAGCCAGAAGATGGAAGCAAAACTGCCTGAGAAAAAGATTCCTTCTACAGCTGCAAAGG 173373 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTA-TCAT--TATGTATCCACTTCTGTGCCCAATCAG 39815 |||||| || || || | ||| | || | | ||||||| | |||||||| | Sbjct 173372 CAACAATCCTTTCACCAAATGTTGCAGTCTTGCTTGCAATCCACTGTAGAGCCCAATCTG 173313 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 |||||||||||||||| || | || || | |||||||| ||| ||| Sbjct 173312 CTTTCTTCTTTACACAGGGAAGAGTCTCAACCGCATTAAACAGAAAAT 173265 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 || |||||||| | ||| ||||||||| ||||| | ||||| || || ||||| || Sbjct 166371 TAGGTATCTATAAGCAGGGAATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAG 166312 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006 || || ||||||||||| ||||| | ||| || ||| ||||||| || |||| ||| Sbjct 166311 CCATAGAAACATCTTGCCTCAGTGACTTGAACTTCTTGTGAAAATCTCTCAACCAAGTTT 166252 Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 40066 ||||| || || ||||| ||| ||||| || || | ||||| || || |||| | | Sbjct 166251 TCATTTACAATGCCATCTGAAGCCGCAAAGAAAGCAAGGACATGCTTGATGAAATGTCTC 166192 Query 40067 TCA 40069 ||| Sbjct 166191 TCA 166189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686535611035320