Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq466 122 1e-22 >seq466 Length=1632705 Score = 122 bits (134), Expect = 1e-22 Identities = 462/720 (64%), Gaps = 19/720 (3%) Strand=Plus/Minus Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947 |||||||| || | | ||||| ||||||||||| ||||||||| | | ||||| Sbjct 917920 TGGAAAGCAATAATAGAAGCTCAAGTAGAGACTGGTACTCCATACATGTTATTTAAAGAT 917861 Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007 | ||||| ||| |||||||| || ||||| ||| || || || || || || Sbjct 917860 TCATGTAATAGAAAAAGTAATCAGAAAAATTTAGGTACCATAAAATGTAGTAACCTGTGC 917801 Query 105008 ACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATC 105067 || ||||| | |||| |||| | ||||| ||| || || ||| | || || || Sbjct 917800 ACTGAAATAGTTGAATATACATCTGATGATGAAGTGGCAGTATGCAACTTAGCCTCTATA 917741 Query 105068 GCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAA 105127 || || | || ||| ||| || | || |||| | | | | | ||| | | ||| Sbjct 917740 GCGCTAAATATGTTTGTTGAT---GATAACAAAACATATAACTTTAAGAAATTAAAAGAA 917684 Query 105128 GTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT 105187 ||||| |||||| | || |||| | || | | | |||||| ||||| |||||| ||| Sbjct 917683 GTTACTAAAACTATAACAGAAAATTTGAATAAAATCATTGATGTAAATTATTACCCTGTT 917624 Query 105188 GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTC 105247 | || ||||||||| | ||||| | || ||||| | |||||||| ||||| Sbjct 917623 CCGGAAGCAAAAAAATCTAATCTTAGACATAGACCTATTGGAATAGGTGTTCAAGGTCTT 917564 Query 105248 GCGGATG------TATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAA 105301 || |||| | || || | || | ||| | | ||| ||||| | || Sbjct 917563 GCTGATGCTTTTATTTTAATGCGTTTACCTTACGAA----AGTCC--AGAAGCTATTAAA 917510 Query 105302 ATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTG 105361 | ||| | |||||||| || || || | | || || ||||| |||| || | Sbjct 917509 TTAAATCAACAAATATTTGAAACTATTTACTATGGAGCACTAGAGGCAAGTTGTGAACTA 917450 Query 105362 GCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTT 105421 ||||| |||| |||||||| | || || | || || | ||| | | Sbjct 917449 GCAGAAAAGTATGGAGTGTATGAAACATACGAAGGATGCCCTGCAAGTCGAGGCATATTA 917390 Query 105422 CAATTTGATATGTGGGAAGGTGAGACCA--AGCTTCACTACGACTGGGAAGCTCTCAAGG 105479 || | || |||| |||| | ||| || || | | |||||| ||| | || | Sbjct 917389 CAGTACGAAATGT-GGAATAAAAATCCAACAGATTTA-TGGGACTGGACTGCTTTAAAAG 917332 Query 105480 AACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCT 105539 || ||| || | ||||||||||| ||| | | || |||||||| || |||| Sbjct 917331 AAAACATTGCCAAGCATGGTCTTCGTAATTCTCTTTTGGTAGCCCCAATGCCCACTGCCT 917272 Query 105540 CCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATC 105599 | || || || || || || |||||||||| ||||| |||| ||| | || || |||| Sbjct 917271 CAACAGCTCAGATTTTAGGAAATAATGAATCTTTTGAGCCCTTCACTTCTAATATTTATC 917212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582943921698120