Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq747 111 1e-19 seq8861 100 2e-16 seq5054 89.7 4e-13 >seq747 Length=8313734 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA-C 27848 ||||| |||||||| |||||||| ||||| ||| || ||| | || |||||| ||| | Sbjct 5399720 ATGCAGATTTTTGTAAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAA-GCATC 5399662 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 |||| || || || ||| |||||| |||||||| || |||| || || Sbjct 5399661 CGACACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCAGATCA 5399602 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || | ||||| || || |||||| | || |||| ||| | || ||||||||||| Sbjct 5399601 GCAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGGACATTATCCGATTACAA 5399542 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| ||| | |||||||| || ||| || | || || Sbjct 5399541 TATTCAAAAAGAATCTACTCTCCATTTGGTATTACGTCTGAGAGGTGG 5399494 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||||||||| ||||| || ||| || ||| | || || ||| ||| | Sbjct 5397440 ATGCAAATTTTTGTGAAAACACTTACCGGTAAAACCATCACATTAGAAGTTGAA-GCATC 5397382 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || || | ||| || ||| || || || ||||| || |||| ||| Sbjct 5397381 TGACACCATTGAAAAT--GTGAAAGCCAAGATTCAGGATAAAGAGGGAATTCCTCCGGAT 5397324 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || || ||||| || ||||| | || |||| || | | || || ||| Sbjct 5397323 CAGCAGCGATTGATCTTTGCAGGCAAACAGCTTGAAGACGGCCGTACACTATCTGACTAC 5397264 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| ||||| ||| |||||||||||||| | ||||||| ||| Sbjct 5397263 AACATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGGC 5397213 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| ||||| || ||| || ||| | || || ||| ||| | Sbjct 5399264 ATGCAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACACTAGAAGTTGAA-GCATC 5399206 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || || | ||| || ||| ||| || |||||||| || |||| ||| Sbjct 5399205 TGACACCATTGAGAAT--GTGAAAGCAAAGATTCAGGACAAAGAGGGAATTCCTCCGGAT 5399148 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| ||||| || ||||| || ||||| | || || | || | | ||||| ||| Sbjct 5399147 CAGCAGCGGTTGATCTTTGCGGGCAAACAGCTTGAAGATGGCCGTACACTATCCGACTAC 5399088 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| ||||| ||| |||| ||||||||| | ||||||| ||| Sbjct 5399087 AACATCCAGAAAGAATCTACTCTGCACTTGGTTTTGAGACTGCGTGGTGGC 5399037 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||||||||| ||||| || ||| || ||| | || || ||| ||| Sbjct 5397897 AATGCAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAA-GCAT 5397839 Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 | || || | ||| || ||| || || |||||||| || |||| || Sbjct 5397838 CTGACACCATCGAAAAT--GTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGA 5397781 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 ||||| || || |||||||| || ||||| | || || | || | || || || || Sbjct 5397780 TCAGCAGCGATTGATTTTTGCTGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTA 5397721 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||| ||||| ||| |||||||||||||| | ||||||| ||| Sbjct 5397720 CAACATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGGC 5397669 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||||||||| ||||| || ||| || ||| | || || ||| ||| Sbjct 5398353 AATGCAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAA-GCAT 5398295 Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 | || || | ||| || ||| || || |||||||| || |||| || Sbjct 5398294 CTGACACCATCGAAAAT--GTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGA 5398237 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 ||||| || || |||||||| || ||||| | || || | || | || || || || Sbjct 5398236 TCAGCAGCGATTGATTTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTA 5398177 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||| ||||| ||| |||||||||||||| | ||||||| ||| Sbjct 5398176 CAACATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGGC 5398125 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||||||||| ||||| || ||| || ||| | || || ||| ||| Sbjct 5398809 AATGCAGATCTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAA-GCAT 5398751 Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 | || || | ||| || ||| || || |||||||| || |||| || Sbjct 5398750 CTGACACCATCGAAAAT--GTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGA 5398693 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 ||||| || || |||||||| || ||||| | || || | || | || || || || Sbjct 5398692 TCAGCAGCGATTGATTTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTA 5398633 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||| ||||| ||| |||||||||||||| | ||||||| ||| Sbjct 5398632 CAACATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGGC 5398581 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| ||||| || ||| || ||| | || || ||| ||| | Sbjct 5398124 ATGCAAATCTTTGTGAAAACACTTACCGGTAAAACCATCACACTAGAAGTTGAA-GCATC 5398066 Query 27850 -GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| || || || ||| || || |||||||| || |||| || || Sbjct 5398065 TGACACCATAGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCA 5398006 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || || || ||||| || ||||| | || || | || | || || || ||||| Sbjct 5398005 GCAGCGATTGATCTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTACAA 5397946 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 |||||| ||||| ||| |||||||||| || ||| Sbjct 5397945 CATCCAGAAAGAATCTACTCTGCATTTGGTGTTACGT 5397909 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| ||||| || ||| || ||| | || || ||| ||| | Sbjct 5398580 ATGCAAATCTTTGTGAAAACACTTACCGGTAAAACCATCACACTAGAAGTTGAA-GCATC 5398522 Query 27850 -GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| || || || ||| || || |||||||| || |||| || || Sbjct 5398521 TGACACCATAGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCA 5398462 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || || || ||||| || ||||| | || || | || | || || || ||||| Sbjct 5398461 GCAGCGATTGATCTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTACAA 5398402 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 |||||| ||||| ||| |||||||||| || ||| Sbjct 5398401 CATCCAGAAAGAATCTACTCTGCATTTGGTGTTACGT 5398365 >seq8861 Length=554 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||||||||| ||||| || ||| || ||| | || || ||| ||| Sbjct 241 AATGCAGATTTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAA-GCAT 183 Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 | || || | ||| || ||| || || |||||||| || |||| || Sbjct 182 CTGACACCATCGAAAAT--GTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGA 125 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 ||||| || || |||||||| || ||||| | || || | || | || || || || Sbjct 124 TCAGCAGCGATTGATTTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTA 65 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||| ||||| ||| |||||||||||||| | ||||||| ||| Sbjct 64 CAACATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGGC 13 >seq5054 Length=501 Score = 89.7 bits (98), Expect = 4e-13 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | ||| || ||||| || | || |||||||| ||||| ||||| Sbjct 74 GACAAGGAAGG-GATCCTCCAGATCAGCAGCGTCTCATCTTTGCCGGCAAACAGTTGGAG 132 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| | |||| || ||||||||||| |||||| ||| ||||||| || || Sbjct 133 GATGGACGCACCCTGTCTGACTACAACATCCAGAAAGAGTCTACTCTGCATTTAGTACTG 192 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 193 CGTCTCCGTGGTGG 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355673897796201