Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq747 104 2e-17 seq8861 86.0 5e-12 >seq747 Length=8313734 Score = 104 bits (114), Expect = 2e-17 Identities = 170/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||| ||||| | |||||||||||||| || || ||||| | Sbjct 5397427 ACAAAAATTTG--CATGCCACCTCTGAGACGTAACACCAAATGCAGAGTAGATTCTTTCT 5397484 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || || || | | ||| || | || |||||||||||||||||||| || | | Sbjct 5397485 GGATGTTGTAGTCAGATAATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAGATCAATC 5397544 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||||| || | ||| | | |||||||||| || || ||| | || | | | Sbjct 5397545 GCTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTCTCTATGG 5397604 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | || | || || || | ||||| |||| || || || ||||| |||||||||| Sbjct 5397605 TGTCAGATGCTTCAACTTCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATTT 5397664 Query 39281 GCAT 39284 |||| Sbjct 5397665 GCAT 5397668 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | |||||||||||||| || || ||||| || || || || || Sbjct 5399262 CATGCCACCTCTGAGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTC 5399321 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | | ||| || | || |||||||||||||||||||| || | |||||||| || | Sbjct 5399322 AGATAATGTACGGCCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGG 5399381 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | | |||||||||| || || ||| | || | | || || | || Sbjct 5399382 GGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTCTCAATGGTGTCAGATGCTTC 5399441 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||| |||| || || || ||||| |||||||| ||||| Sbjct 5399442 AACTTCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCAT 5399492 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | |||||||||||||| || || ||||| || || || || || | Sbjct 5397898 CCACCTCTGAGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5397957 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||| || | || |||||||||||||||||||| || | |||||||| || | ||| Sbjct 5397958 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGA 5398017 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||||| || || ||| | | | | || || | || || Sbjct 5398018 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAACT 5398077 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| || || || ||||| |||||||||||||| Sbjct 5398078 TCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATTTGCAT 5398124 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | |||||||||||||| || || ||||| || || || || || | Sbjct 5398354 CCACCTCTGAGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5398413 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||| || | || |||||||||||||||||||| || | |||||||| || | ||| Sbjct 5398414 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGA 5398473 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||||| || || ||| | | | | || || | || || Sbjct 5398474 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAACT 5398533 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| || || || ||||| |||||||||||||| Sbjct 5398534 TCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATTTGCAT 5398580 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | |||||||||||||| || || ||||| || || || || || | Sbjct 5398810 CCACCTCTGAGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 5398869 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||| || | || |||||||||||||||||||| || | |||||||| || | ||| Sbjct 5398870 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGA 5398929 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||||| || || ||| | | | | || || | || || Sbjct 5398930 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACT 5398989 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| || || || ||||| |||||||| ||||| Sbjct 5398990 TCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCAT 5399036 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || ||||| || || || ||||| || || || || |||| ||||| || | || Sbjct 5399053 AAAACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCGGATAGTGTACGGCCATCT 5399112 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 |||||||||||||||||||| || | |||||||| || | || | | |||||||||| Sbjct 5399113 TCAAGCTGTTTGCCCGCAAAGATCAACCGCTGCTGATCCGGAGGAATTCCCTCTTTGTCC 5399172 Query 39193 ATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| | | || ||| | || | | || || | || || || | ||||| | Sbjct 5399173 -TGAATCTTTGCTTTCACATTCTCAATGGTGTCAGATGCTTCAACTTCTAGTGTGATGGT 5399231 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || || ||||| |||||||| ||||| Sbjct 5399232 TTTACCGGTAAGTGTTTTCACAAAGATCTGCAT 5399264 >seq8861 Length=554 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | |||| ||||||||| || || ||||| || || || || || | Sbjct 242 CCACCTCTGAGACGTAGCACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 301 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||| || | || |||||||||||||||||||| || | |||||||| || | ||| Sbjct 302 AATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGA 361 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||||| || || ||| | | | | || || | || || Sbjct 362 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAACT 421 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| || || || ||||| |||||||| ||||| Sbjct 422 TCTAGTGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCAT 468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429318067413719