Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq747 141 6e-29 seq8861 127 1e-24 seq5054 98.7 7e-16 >seq747 Length=8313734 Score = 141 bits (156), Expect = 6e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| ||||| || ||||| || || | ||||| || | | Sbjct 5399720 ATGCAGATTTTTGTAAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCATCC 5399661 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| ||||| ||||||| |||||||| || | || |||||||| Sbjct 5399660 GACACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCAGATCAG 5399601 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || |||||||| ||||||| ||| || ||| ||||||||| Sbjct 5399600 CAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGGACATTATCCGATTACAAT 5399541 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || |||||||| || || | ||||| || ||| | || |||| ||| Sbjct 5399540 ATTCAAAAAGAATCTACTCTCCATTTGGTATTACGTCTGAGAGGTGGA 5399493 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| || || ||||| || |||||| | ||||| || | || Sbjct 4903444 ATGCAGATCTTCGTGAAAACTCTGACCGGAAAGACCATCACTTTGGAAGTAGAAGCTTCG 4903503 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||||||||| | || || |||||| Sbjct 4903504 GACACAATCGAGAACGTGAAGGCGAAGATCCAAGACAAAGAAGGAATTCCTCCTGATCAA 4903563 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || |||||||||| |||||| || || ||||| Sbjct 4903564 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAAT 4903623 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || || ||| | |||||||| ||| | | ||||||||| Sbjct 4903624 ATTCAAAAGGAATCTACACTCCATTTAGTGTTACGTCTACGAGGAGGA 4903671 Score = 129 bits (142), Expect = 4e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || || || |||||| | ||||| || | || Sbjct 4903216 ATGCAGATCTTTGTGAAAACTCTAACCGGCAAGACCATCACTTTAGAAGTGGAGCCTTCG 4903275 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||||||||| | || || ||||| Sbjct 4903276 GACACAATTGAGAATGTGAAGGCGAAGA-TCCAAGACAAAGAAGGAATTCCTCCTGATCA 4903334 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||| ||||| || |||||||||| |||||| || || ||||| Sbjct 4903335 ACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCAGACTACAA 4903394 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| |||||||| |||||| | ||| Sbjct 4903395 CATTCAAAAAGAATCCACACTCCAT 4903419 >seq8861 Length=554 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || ||||| || || || ||||| ||||| | |||||||| | | Sbjct 241 AATGCAGATTTTTGTGAAAACACTTACCGGTAAAACCATCACATTGGAAGTTGAAGCATC 182 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | ||| || ||| |||||||| || | || |||||||| Sbjct 181 TGACACCATCGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCCCCAGATCA 122 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||| |||||||| || ||||| | || || ||| || ||||| Sbjct 121 GCAGCGATTGATTTTTGCGGGCAAACAGCTTGAAGATGGTCGTACATTATCTGACTACAA 62 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||| || || | ||||| ||||| || |||| || || Sbjct 61 CATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGACTGCGTGGTGG 14 >seq5054 Length=501 Score = 98.7 bits (108), Expect = 7e-16 Identities = 138/190 (73%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAA 23689 ||| || || || || || ||||| ||||| || || | || || |||| ||| | || Sbjct 1 CCTGACTGGCAAGACAATTACTCTTGAAGTCGAGCCCTCAGATACAATTGAGAATGTGAA 60 Query 23690 AACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCG 23749 | | |||| | ||||| ||||| | || |||||||| |||||| | || ||||||| Sbjct 61 AGCCAAAA-TCCAAGACAAGGAAGGGAT-CCTCCAGATCAGCAGCGTCTCATCTTTGCCG 118 Query 23750 GCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACAT 23809 ||||||| |||| || | |||||| | || |||||||| || |||||||| || Sbjct 119 GCAAACAGTTGGAGGATGGACGCACCCTGTCTGACTACAACATCCAGAAAGAGTCTACTC 178 Query 23810 TACATTTAGT 23819 | |||||||| Sbjct 179 TGCATTTAGT 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337830554519204