Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq747 170 5e-37 seq466 170 5e-37 seq5054 145 2e-29 seq8861 118 3e-21 seq43463 107 5e-18 seq1524 102 2e-16 >seq747 Length=8313734 Score = 170 bits (188), Expect = 5e-37 Identities = 162/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| ||||| ||||| |||||||||||||| | ||||| || | ||| || Sbjct 4903437 ACGAAGACGCAGTACAAGATGGAGTGTGGATTCTTTTTGAATGTTGTAGTCTGACAAGGT 4903378 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| ||||| ||||| || || ||||| || || ||||| || Sbjct 4903377 GCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATTCC 4903318 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||||||||| ||||||| || || ||||| || | ||||| ||||| Sbjct 4903317 TTCTTTGTCTTGGATCTTCGCCTTCACATTCTCAATTGTGTCCGAAGGCTCCACTTCTAA 4903258 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| || | |||||| Sbjct 4903257 AGTGATGGTCTTGCCGGTTAGAGTTTT 4903231 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || ||||| ||||| | |||||| || | ||| || | || ||||| |||||| Sbjct 4903646 TGGAGTGTAGATTCCTTTTGAATATTGTAGTCTGACAAGGTGCGTCCGTCTTCCAGCTGC 4903587 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| || || ||||| || || ||||| ||||| |||||||||||||| Sbjct 4903586 TTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATCTTC 4903527 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| ||||| ||||| || | ||| || || || ||||| ||||| || ||| Sbjct 4903526 GCCTTCACGTTCTCGATTGTGTCCGAAGCTTCTACTTCCAAAGTGATGGTCTTTCCGGTC 4903467 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | |||||| | ||| | ||||| Sbjct 4903466 AGAGTTTTCACGAAGATCTGCAT 4903444 Score = 145 bits (160), Expect = 2e-29 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 |||||||| ||||||||||| | ||||||||||| || || | || ||||| || || Sbjct 5399518 TGGAGAGTAGATTCTTTTTGAATATTGTAATCGGATAATGTCCGTCCGTCTTCAAGTTGT 5399577 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 ||||||||||| || ||||| || || || || ||||| || || |||||||| || ||| Sbjct 5399578 TTCCCAGCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAAT-TTT 5399636 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || ||| ||| |||||||| || | ||| || ||||| || || || || || || Sbjct 5399637 TGCTTTTACATTTTCTATGGTGTCGGATGCTTCGACTTCTAATGTTATGGTTTTACCAGT 5399696 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | |||||||| || | ||||| Sbjct 5399697 GAGAGTTTTTACAAAAATCTGCAT 5399720 Score = 123 bits (136), Expect = 6e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||||| || | || ||||| |||||||| |||| ||||| || | || || Sbjct 5397675 ACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGT 5397734 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| ||||| || ||||| || || | ||| || || || || ||||| || Sbjct 5397735 ACGACCATCTTCAAGCTGTTTGCCAGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCC 5397794 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| || ||||| |||||| |||||||||||| || | ||| || || || Sbjct 5397795 CTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAA 5397854 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | ||||| | || | |||||| Sbjct 5397855 TGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5397897 Score = 118 bits (130), Expect = 3e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||||| || | || ||||| |||||||| |||| ||||| || | || || Sbjct 5398131 ACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGT 5398190 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| ||||| || || || || || | ||| || || || || ||||| || Sbjct 5398191 ACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCC 5398250 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| || ||||| |||||| |||||||||||| || | ||| || || || Sbjct 5398251 CTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAA 5398310 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | ||||| | || | |||||| Sbjct 5398311 TGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5398353 Score = 118 bits (130), Expect = 3e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||||| || | || ||||| |||||||| |||| ||||| || | || || Sbjct 5398587 ACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGT 5398646 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| ||||| || || || || || | ||| || || || || ||||| || Sbjct 5398647 ACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCC 5398706 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| || ||||| |||||| |||||||||||| || | ||| || || || Sbjct 5398707 CTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAA 5398766 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | ||||| | || | |||||| Sbjct 5398767 TGTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5398809 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| |||||||| |||| ||||| || | || || | |||||||| ||||| Sbjct 5398834 TGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGACCATCTTCAAGCTGT 5398893 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| | ||| || || || || ||||| || || ||||| || ||||| Sbjct 5398894 TTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGAATCTTG 5398953 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| |||||||||||| || | ||| || |||| ||||| || || || || Sbjct 5398954 GCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCTAGTGTGATGGTTTTACCGGTA 5399013 Query 225691 AAAGTTTT 225698 | ||||| Sbjct 5399014 AGTGTTTT 5399021 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||||| || | || | ||| |||||||| |||| ||||| || | | || Sbjct 5396991 ACGGAGTCTCAAAACCAAATGTAAAGTAGATTCTTTCTGGATGTTGTAGTCAGATAGTGT 5397050 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| ||||| || || || ||||| | ||| || || || || ||||| || Sbjct 5397051 ACGGCCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCCGGAGGAATTCC 5397110 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| || ||||| |||||| |||||||||||| || | ||| || || || Sbjct 5397111 CTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAA 5397170 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| || || || || | ||||| Sbjct 5397171 TGTGATGGTTTTACCGGTAAGTGTTTT 5397197 >seq466 Length=1632705 Score = 170 bits (188), Expect = 5e-37 Identities = 172/221 (78%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||||| || ||||| || ||||||||||| |||| || || || | | ||| | Sbjct 1583291 AAGTCTCAAAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTGAAAGAGTGCG 1583350 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||||| || ||||| || ||||| || ||||||||||| || ||||||||||| Sbjct 1583351 GCCATCTTCTAATTGTTTCCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTC 1583410 Query 225615 CTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 |||||||||||| ||| || || ||| |||||| ||||| || | |||||| || || | Sbjct 1583411 CTTGTCTTGGAT-TTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTCCACCTCCAATG 1583469 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | || ||||| ||||| | ||||| | ||| | ||||||| Sbjct 1583470 TAATGGTCTTCCCCGTAAGGGTTTTGACGAATATTTGCATT 1583510 >seq5054 Length=501 Score = 145 bits (160), Expect = 2e-29 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| || || |||||||| || | |||||| || | || || Sbjct 428 CGAAGACGTAGTACTAAGTGCAGGGTAGATTCTTTCTGAATATTGTAGTCTGATAAGGTG 369 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | ||||| ||||||||||| |||| |||||||| || ||||| ||| Sbjct 368 CGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAGTCTCTGTTGGTCTGGAGGAATGCCT 309 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||| |||||| || ||| ||| || || ||||| | ||| || || | Sbjct 308 TCCTTGTCCTGGAT-TTTTGCTTTGACATTTTCAATTGTATCTGAAGCTTCAACCTCAAG 250 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | |||||||| || | ||||| Sbjct 249 GGTGATTGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCAT 208 Score = 100 bits (110), Expect = 7e-16 Identities = 145/201 (72%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | || ||||| || ||||| |||| ||||| || | || || Sbjct 201 ACGGAGACGCAGTACTAAATGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 142 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || | ||| || || || ||||| || || || || || || ||| | || Sbjct 141 GCGTCCATCCTCCAACTGTTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGA-TCCC 83 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||||||||| ||| || |||||| || || || ||||||| || || || | Sbjct 82 TTCCTTGTCTTGGAT-TTTGGCTTTCACATTCTCAATTGTATCTGAGGGCTCGACTTCAA 24 Query 225671 ACGTGATCGTCTTGCCCGTCA 225691 || || |||||||| |||| Sbjct 23 GAGTAATTGTCTTGCCAGTCA 3 >seq8861 Length=554 Score = 118 bits (130), Expect = 3e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||||| || | || ||||| |||||||| |||| ||||| || | || || Sbjct 19 ACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGT 78 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| ||||| || || || || || | ||| || || || || ||||| || Sbjct 79 ACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCC 138 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| || ||||| |||||| |||||||||||| || | ||| || || || Sbjct 139 CTCTTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAA 198 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | ||||| | || | |||||| Sbjct 199 TGTGATGGTTTTACCGGTAAGTGTTTTCACAAAAATCTGCATT 241 >seq43463 Length=15643 Score = 107 bits (118), Expect = 5e-18 Identities = 130/176 (74%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || |||| | || || ||||| ||| |||| ||||| ||| | ||||| Sbjct 11975 CAAATTTATAATACTATTGTAACAGCACATGCTTTTATTATAATTTTTTTTATAGTTATA 12034 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| |||||| | || | || || || ||| Sbjct 12035 CCTATTATAATTGGAGGATTTGGAAATTGATTAGTTCCTCTTATACTAGGAGCACCAGAT 12094 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTA-CCGCCTTCCTTAT 7726 || || || ||| | | || |||||||| |||||| | ||| || ||| |||||| Sbjct 12095 ATAGCATTCCCACGAATAAATAATATAAGATTTTGACTCCTACCCCCCTCCCTTAT 12150 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| ||||||||||| |||||||||||||| | || || || ||||| || | Sbjct 12547 TTCAGGATGTCCAAAAAATCAAAATAAATGTTGATATAAAATTGGGTCTCCTCCTCCAGC 12488 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| ||||| || |||| ||| ||||| Sbjct 12487 AGGATCAAAAAATGATGTATTTAAGTTTCGATCTGTTAA 12449 >seq1524 Length=4011 Score = 102 bits (112), Expect = 2e-16 Identities = 129/176 (73%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || |||| | || || ||||| ||| |||| |||| ||| | ||||| Sbjct 3724 CAAATTTATAATACTATTGTAACAGCACATGCTTTTATTATAATTTGTTTTATAGTTATA 3665 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| |||||| | || | || || || ||| Sbjct 3664 CCTATTATAATTGGAGGATTTGGAAATTGATTAGTTCCTCTTATACTAGGAGCACCAGAT 3605 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTA-CCGCCTTCCTTAT 7726 || || || ||| | | || |||||||| |||||| | ||| || ||| |||||| Sbjct 3604 ATAGCATTCCCACGAATAAATAATATAAGATTTTGACTCCTACCCCCCTCCCTTAT 3549 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| ||||||||||| |||||||||||||| | || || || ||||| || | Sbjct 3152 TTCAGGATGTCCAAAAAATCAAAATAAATGTTGATATAAAATTGGGTCTCCTCCTCCAGC 3211 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| ||||| || |||| ||| ||||| Sbjct 3212 AGGATCAAAAAATGATGTATTTAAGTTTCGATCTGTTAA 3250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191867115523322