Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq472 208 6e-49 >seq472 Length=1464009 Score = 208 bits (230), Expect = 6e-49 Identities = 640/972 (66%), Gaps = 31/972 (3%) Strand=Plus/Plus Query 109140 CGCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTT 109199 ||| ||||| ||||||||||||||||| | || || || |||||| || ||| | Sbjct 407345 CGCTTACTTCGTCGAATGGGGTGTGTATCCTAGAAAGTTCCCTGTGGACCGCGTTCCGGT 407404 Query 109200 GCCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAA 109259 || || | | |||||||| ||||| || ||||| || ||||| || || |||||||| Sbjct 407405 TCCGAACCTGACTCATTTGCTCTACGGCTTCATTCCGATTTGTGGTGGTGATGGCATCAA 407464 Query 109260 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCG 109319 ||| | ||| ||| ||||||||| | || | ||||| || ||| |||| || Sbjct 407465 TGACAGTTTGAAAGAAATTGAGGGCAGTTTTCAAGCACTACAACGTTCATGCAGCGGCCG 407524 Query 109320 CGACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGG 109379 || || ||||| || || || ||||| ||||| || |||| ||||| ||||| || Sbjct 407525 TGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAACCTCAAAAGGG 407584 Query 109380 CGTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATT 109439 | | | ||||||||||| |||||||| ||||| || || ||||| | ||| Sbjct 407585 ATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGATGCAGTTGAAACA 407644 Query 109440 GGCAAATCCTCACGTTAAAATTC-TACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGT 109498 || ||| || | ||||| || |||| || || || || ||||| ||| | || || | Sbjct 407645 AGCGAATACTGGC-TTAAAGGTCTTACCTTCAATTGGTGGCTGGACATTGGCCGATCCCT 407703 Query 109499 TTTATTTTATGCACGATTCGGCGAA---AAGAGCCA--CATTCGTTGAATCGGTGCGCGA 109553 | | | || | ||| || | || ||| | | ||||||| || ||| || Sbjct 407704 TCT-TCTTCTTCAC----CGACAAAACCAAGCGTGATCGTTTCGTTGCCTCCGTGAAAGA 407758 Query 109554 ATTTTTACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGG 109613 || | ||| ||||| ||||| || || |||||||||||||||||||| || || || Sbjct 407759 CTTCCTCCAAACTTGGAAGTTCTTCGATGGTGTCGACATTGATTGGGAGTTCCCAGGTGG 407818 Query 109614 CAAGGGTGCCAATCCGAGTCTCGG-CGACGCAACGCGCGACAGCAAAACGTACATTGCGT 109672 ||| || || || || |||||| | | || | || | | |||| || | Sbjct 407819 CAAAGGCGCTAACCCTGATCTCGGTAGTCCTAAAGACGGAGATGTATACGTTCA----GC 407874 Query 109673 TGTTAAAAGAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCCACCAACAAAACGTACG 109732 | | || || || || |||||||| || || | | || | ||| |||| Sbjct 407875 TCATGAAGGAATTACGTCAAATGTTGGATGAGCTGGCGGCTGAGACTGGTAGAACTTACG 407934 Query 109733 AATTGACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGG 109792 | ||||| ||||| |||||||||| || || || | || || | ||| | | Sbjct 407935 AGTTGACCTCTGCCATCAGCGCCGGTTGGGACAAGATCCAAGTCGTGAACTACAAGGAAG 407994 Query 109793 CGCAACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAA 109852 | || |||| ||||| | || || | |||| ||||| ||||| || || ||||| | Sbjct 407995 CCCAGAAATACATGGACCATATCTTCGTTATGAGTTACGACTTCAAGGGTGCCTGGTCTA 408054 Query 109853 AC-ACGGACT-TAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATT 109910 || || ||| | || | || || || | || || || | |||| ||| || ||| Sbjct 408055 ACGAC--ACTCTGGGACACCAGACTGCTCTATATGCTCCATCTTGGAGTCCTAAGGAAAC 408112 Query 109911 GTACACGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTC--GCCTaaaaaa 109968 ||||| ||||| | | ||| | ||| | || || ||||| ||| ||||| Sbjct 408113 TTACACCACCGACTTCGGTATCAGGTACCTG--CTGACCCAAGGTGTCCAGCCCAAAAAG 408170 Query 109969 aTTATAATTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCGTCGTGCACGCCGACGAC 110028 | | | || || || |||||||| || || ||||| || || |||| | || || Sbjct 408171 CTGGTTGTCGGTGTTGCTATGTACGGACGTGGTTGGACTGG---AGTTCACGACTACAAC 408227 Query 110029 G-CGA-AT-CCGTTTTTGGGCATCGCCTCCGGTCCCGTGGAAGGCACTTGGGAAAACGGC 110085 | ||| || || || || | || ||||| || |||| |||||| | |||| Sbjct 408228 GACGACATACCCTTCACTGGAGTTGCTAATGGTCCAGTTAAAGGAACTTGGCAGGACGGT 408287 Query 110086 GTGGTGGACTAT 110097 |||||||||||| Sbjct 408288 GTGGTGGACTAT 408299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409443800497917