Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq466 594 7e-165 seq483 95.1 2e-14 >seq466 Length=1632705 Score = 594 bits (658), Expect = 7e-165 Identities = 1212/1783 (68%), Gaps = 32/1783 (2%) Strand=Plus/Plus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||||| ||||| || || | | | ||| |||||||| || | ||| ||||| || Sbjct 916827 TTATCCACAGTAAATTGTATGGCATTGGCTGCCGGTTTTGTTCGCAAATAATACATCCCT 916886 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||||| ||||| ||||| |||||||| || || | ||| || | || Sbjct 916887 GTTTTTAAACCCATTTTCCATGAATAGAAATGAATAGAAGTTAATTTTCCGTAGTTCGGT 916946 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 || || | || ||||| | || ||||||||||| || |||||||| | |||||| ||| Sbjct 916947 TCAGCAACGTGTATATTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAGCC 917006 Query 76953 ATTTTTATAATGGTCTTTTGA--GGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATAT 77010 |||| ||| || | |||||| | ||||||||||| || || | | | | || | Sbjct 917007 ATTTGTAT--TGTTGTTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCCCTTATTT 917064 Query 77011 CATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTA 77067 | || | || ||||||| || || ||| || |||||| ||| || | Sbjct 917065 CTGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCA 917124 Query 77068 TATCATCATTCCACAATT-TCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATT 77126 | || |||| ||| || | | || ||||| ||| | | ||| | |||| |||| || | | Sbjct 917125 TTTCCTCATCCCATAAATCTGCT-TCTGTCAAATCACGAAGTAAATGATGATTTACAACT 917183 Query 77127 TGAAATTCTCCAGACAATAC---TCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 77183 |||||||||||||| || || ||| || ||||||||| || | || || | | Sbjct 917184 TGAAATTCTCCAGATAAAACACGTCTTTGA---TAAATATTAGAAGTGAAGGGCTCAAAA 917240 Query 77184 GATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAA 77243 |||||||| ||||| ||||| ||||| || || ||||| ||||| || || ||||| | | Sbjct 917241 GATTCATTATTTCCTAAAATCTGAGCTGTTGAGGCAGTGGGCATTGGGGCTACCAAAAGA 917300 Query 77244 CTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCT 77303 ||| | |||||||| | || || ||||||| | |||| ||||| | |||| Sbjct 917301 GAATTACGAAGACCATGCTTGGCAATGTTTTCTTTTAAAGCAGTCCAGTCCCATAAATCT 917360 Query 77304 GAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTA 77363 | || || ||| | ||||| |||| || || ||| ||| |||| | Sbjct 917361 GTTGGATTTTTATTCCACATTTCGTACTGTAATATGCCTCGACTTGCAGGGCATCCTTCG 917420 Query 77364 TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAA 77423 ||||||||||| ||| | |||| |||||||||||||| || || | |||||| || Sbjct 917421 TATGTTTCATACACTCCATACTTTTCTGCTAGTTCACAACTTGCCTCTAGTGCTCCATAG 917480 Query 77424 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT-GCTTCAATACTATCAAACGGATA 77482 ||||| ||||| || || | | ||| | || | | ||||| ||| || | || | Sbjct 917481 TAAATAGTTTCAAATATTTGTTGATTTA-ATTTAATAGCTTCTGGACTTTCGTAAGGTAA 917539 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCT 77542 | | | | |||||| ||||| || | || ||||| || || ||||||||||||||||| Sbjct 917540 ACGCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCTATGTCT 917599 Query 77543 CTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAG 77602 ||| || |||| ||||| |||| ||| |||||||| | || || |||||||| | Sbjct 917600 AAGATTAGATTTTTTTGCTTCCGGAACAGGGTAATAATTTACATCAATGATTTTATTCAA 917659 Query 77603 ATTT-CTAACAACTACTTTAACCA-CGTCCTTTAGTTTAAGAAAATCAAATCTTCC---A 77657 |||| || | || ||| | | | || |||| ||| ||| | | || || | Sbjct 917660 ATTTTCTGTTA--TAGTTTTAGTAACTTCTTTTAATTTCTTAAAGTTATATGTTTTGTTA 917717 Query 77658 TCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCG 77717 || ||||||||| || | |||||||| |||| || || ||||| || |||| | | Sbjct 917718 TCATCAACAAACATATTTAGCGCTATAGAGGCTAAGTTGCATACTGCCACTTCATCATCA 917777 Query 77718 TTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGT 77777 | ||||| | ||| || || || || ||||||||||| || || || | ||||| Sbjct 917778 GATGTATATTCAACTATTTCAGTGCACAGGTTACTACATTTTATGGTACCTAAATTTTTC 917837 Query 77778 TGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATC 77837 || || || ||| |||| ||||| || ||| | | || | ||||| || || || | Sbjct 917838 TGATTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTACT 917897 Query 77838 TGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTA--TCGCC 77895 || | ||| || || | |||||| | ||| || ||| | | ||| | || Sbjct 917898 TGAGCTTCTATTATTGCTTTCCAAAGAACTTGTGCCCTTAC--TTGTTTTACAAATCTAT 917955 Query 77896 TCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATC 77955 | ||| |||||||| ||||| ||||||||| | ||||||| ||| | || | Sbjct 917956 TTTCTTTTTCATATGTTTCATATAAGGATTCAAATTCTTTTCCCCAACAGTCAGCTAACC 918015 Query 77956 CAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAA 78015 | ||||| |||| || ||||| | | ||| | ||||| | | ||||| |||||| | Sbjct 918016 CTGGGCAATCATGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCATGA 918075 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTG 78075 | |||||||||||||| | ||| ||| || || | || | |||||| ||||| | Sbjct 918076 AAAGATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTTCCAG 918135 Query 78076 TATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTG 78135 | || || || | ||| | || || | ||||| | |||||| ||||| | ||| | || Sbjct 918136 TGTTTTTCTTTAAATCTAAGAATTCAAATATATCGGCATGCCACGGTTCCAAATAGACTG 918195 Query 78136 CCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAA 78195 | | | ||||||| || ||||||||||| ||||| | |||||| || || ||||| |||| Sbjct 918196 CAAAAGCTCCAGGGCGCTTATTACCTCCTTGATCAACATATCTAGCTGTATTATTGTAAA 918255 Query 78196 CTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCAC 78255 ||| |||||||| | || ||| || ||| ||||||||||| | |||||| | || Sbjct 918256 CTCGTAACATTGGTACAAGACCATTTGATACACCATTTGTTCCTGCTATATAAGTACCTT 918315 Query 78256 TTGCGCGAAT--ATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 | || | || | | ||||| | || ||||| ||||| |||||||| | ||| Sbjct 918316 TAGCCCTTATACAGTGGACATGGACA--CCAATTCCACCTGCAGATTTAGATATCAAAGC 918373 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 || | || || |||||||| || || || || |||||||| |||| | ||||| Sbjct 918374 ACACTGCTTTAAGGTATCGTAAATTCCTTCAATGCTGTCATCTTTCATTGCCACTAGAAA 918433 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 ||| || | ||| | | |||| | || ||||| || || ||||| || Sbjct 918434 ACATGATGATAGTTGGGGGCGTGGAGTTGCAGCTGAGAATAAGGTTGGGCTGGCATGAGT 918493 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493 || |||| |||||||||| |||||||| | || |||| || || || ||| Sbjct 918494 GAAATATTTCTCAGAAAGTAAGTTGTATGTATTTATGGCTGCATCAATATCTTCACCATG 918553 Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCA 78536 |||||| | | || ||||||| |||||| ||||||| |||| Sbjct 918554 AATTCCAATTGACACTCGCATCAGCATATGTTGAGGTCGTTCA 918596 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 |||||| ||||||||||| || ||||| || ||||||||||| ||||||| || || Sbjct 919316 CTTATTGTTTATTTTCAATAAATATGAGCGCTCTAAAGTTTTAAACCCAAAATGATTATA 919375 Query 78602 TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAAT 78661 | |||||||| || || | |||| |||||| || | | ||||| | || |||| || Sbjct 919376 TTTGAAGTCTCTGTCATACACAATAGCAGAATCTAATCTTTCTTTATGGTTCATAACTAT 919435 Query 78662 AT 78663 || Sbjct 919436 AT 919437 >seq483 Length=1310704 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/225 (70%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| || ||| | ||| ||| ||||| || || ||||| || || || |||||| Sbjct 173490 TCATCCCTGGAAATAAGTTCATTACTGAATGTAAGTCCCGGCATAAGGCCCCGCTTTTTG 173431 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| || || | || ||| || || || || || |||||||| || ||||| || Sbjct 173430 AGCCAGAAGATGGAAGCAAAACTGCCTGAGAAAAAGATTCCTTCTACAGCTGCAAAGGCA 173371 Query 48285 GTAAGTCTCTCTCC----GTAACTGGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGC 48340 || || || || || | | ||| ||| |||||| || | |||||||| || Sbjct 173370 ACAATCCTTTCACCAAATGTTGCAGTCTTGCTTG-CAATCCACTGTAGAGCCCAATCTGC 173312 Query 48341 CTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 |||||||||||||| || | || || | |||||||| ||||| Sbjct 173311 TTTCTTCTTTACACAGGGAAGAGTCTCAACCGCATTAAACAGAAA 173267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694291395124320