Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq747 125 2e-23 seq8861 111 4e-19 seq5054 111 4e-19 >seq747 Length=8313734 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| |||||||| |||||||| || |||||||||| ||| || | || ||||| || Sbjct 5399517 ATGGAGAGTAGATTCTTTTTGAATATTGTAATCGGATAATGTCCGTCCGTCTTCAAGTTG 5399576 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 |||||| ||||| || || | |||||| || | | || || || || ||||||||||| Sbjct 5399577 TTTCCCAGCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTT 5399636 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 | ||| ||| | |||| | |||| || || ||||| | || || ||||| || || Sbjct 5399637 TGCTTTTACATTTTCTATGGTGTCGGATGCTTCGACTTCTAATGTTATGGTTTTACCAGT 5399696 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 |||||| || || || | |||||| Sbjct 5399697 GAGAGTTTTTACAAAAATCTGCAT 5399720 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || |||||||| ||||| ||||||||||| |||| || || | |||||||| | Sbjct 5399058 CAAG-TGCAGAGTAGATTCTTTCTGGATGTTGTAGTCGGATAGTGTACGGCCATCTTCAA 5399116 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| | || |||||| |||| | ||||| || || || |||| Sbjct 5399117 GCTGTTTGCCCGCAAAGATCAACCGCTGCTGATCCGGAGGAATTCCCTCTTTGTCCTGAA 5399176 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||| ||| |||| | | |||| || || ||||| || || || ||||| | Sbjct 5399177 TCTTTGCTTTCACATTCTCAATGGTGTCAGATGCTTCAACTTCTAGTGTGATGGTTTTAC 5399236 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || ||||| |||| |||||| Sbjct 5399237 CGGTAAGTGTTTTCACAAAGATCTGCAT 5399264 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| |||||||| ||||| ||||||||||| || | ||| || | |||||||| || Sbjct 5399289 ATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGGCCATCTTCAAGCTG 5399348 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || ||||| | | |||||| || | | ||||| || || || ||||| || Sbjct 5399349 TTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGAATCTT 5399408 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| |||| | | |||| || || ||||| || || || ||||| || || Sbjct 5399409 GGCTTTCACATTCTCAATGGTGTCAGATGCTTCAACTTCTAGTGTGATGGTTTTACCGGT 5399468 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| |||| ||||||| Sbjct 5399469 AAGTGTTTTCACAAAGATCTGCATT 5399493 Score = 111 bits (122), Expect = 4e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| |||||||| ||||| ||||||||||| || | ||| || | |||||||| || Sbjct 5397465 ATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGACCATCTTCAAGCTG 5397524 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || ||||| | | |||||| || | | ||||| || || || ||||| || Sbjct 5397525 TTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGAATCTT 5397584 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| |||||| | |||| || || ||||| || || || ||||| || || Sbjct 5397585 GGCTTTCACATTCTCTATGGTGTCAGATGCTTCAACTTCTAGTGTGATGGTTTTACCGGT 5397644 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| |||| ||||| Sbjct 5397645 AAGTGTTTTCACAAAGATTTGCAT 5397668 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| |||||||| ||||| ||||||||||| || | ||| || | |||||||| || Sbjct 5397921 ATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGACCATCTTCAAGCTG 5397980 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || ||||| | | |||||| || | | ||||| || || || ||||| || Sbjct 5397981 TTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGAATCTT 5398040 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| | |||| | |||| || || ||||| || || || ||||| || || Sbjct 5398041 GGCTTTCACATTTTCTATGGTGTCAGATGCTTCAACTTCTAGTGTGATGGTTTTACCGGT 5398100 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| |||| ||||| Sbjct 5398101 AAGTGTTTTCACAAAGATTTGCAT 5398124 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| |||||||| ||||| ||||||||||| || | ||| || | |||||||| || Sbjct 5398377 ATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGACCATCTTCAAGCTG 5398436 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || ||||| | | |||||| || | | ||||| || || || ||||| || Sbjct 5398437 TTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGAATCTT 5398496 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| | |||| | |||| || || ||||| || || || ||||| || || Sbjct 5398497 GGCTTTCACATTTTCTATGGTGTCAGATGCTTCAACTTCTAGTGTGATGGTTTTACCGGT 5398556 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| |||| ||||| Sbjct 5398557 AAGTGTTTTCACAAAGATTTGCAT 5398580 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| |||||||| ||||| ||||||||||| || | ||| || | |||||||| || Sbjct 5398833 ATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGACCATCTTCAAGCTG 5398892 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || ||||| | | |||||| || | | ||||| || || || ||||| || Sbjct 5398893 TTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGAATCTT 5398952 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| | || | | |||| || || ||||| || || || ||||| || || Sbjct 5398953 GGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCTAGTGTGATGGTTTTACCGGT 5399012 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| |||| |||||| Sbjct 5399013 AAGTGTTTTCACAAAGATCTGCAT 5399036 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||| |||||||| ||||| ||||||||||| || | ||| || | Sbjct 5397679 AGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGA 5397738 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || || || | | |||||| || | | ||||| || Sbjct 5397739 CCATCTTCAAGCTGTTTGCCAGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCCCTCT 5397798 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || ||||| || ||| ||| | || | | |||| || || ||||| | || Sbjct 5397799 TTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGTG 5397858 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || ||||| |||| ||||||| Sbjct 5397859 ATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5397897 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||| |||||||| ||||| ||||||||||| || | ||| || | Sbjct 5398135 AGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGA 5398194 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || || || | | |||||| || | | ||||| || Sbjct 5398195 CCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCCCTCT 5398254 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || ||||| || ||| ||| | || | | |||| || || ||||| | || Sbjct 5398255 TTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGTG 5398314 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || ||||| |||| ||||||| Sbjct 5398315 ATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5398353 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||| |||||||| ||||| ||||||||||| || | ||| || | Sbjct 5398591 AGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGA 5398650 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || || || | | |||||| || | | ||||| || Sbjct 5398651 CCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCCCTCT 5398710 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || ||||| || ||| ||| | || | | |||| || || ||||| | || Sbjct 5398711 TTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGTG 5398770 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || ||||| |||| ||||||| Sbjct 5398771 ATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATT 5398809 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | || | ||| | |||||| ||||| ||||||||||| || | || || | Sbjct 5396994 GAGTCTCAAAACCAAATGTAAAGTAGATTCTTTCTGGATGTTGTAGTCAGATAGTGTACG 5397053 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || ||| || || ||||| | | |||||| |||| | ||||| || Sbjct 5397054 GCCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCCGGAGGAATTCCCTC 5397113 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || || ||||| || ||| ||| | || | | |||| || || ||||| | || Sbjct 5397114 TTTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGT 5397173 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || || || || |||| |||||| Sbjct 5397174 GATGGTTTTACCGGTAAGTGTTTTGACAAAGATCTGCAT 5397212 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||| |||||||| ||||| ||||||||||| || | || || | Sbjct 5397223 AGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAGTGTACGG 5397282 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| || ||| || || ||||| | | |||||| |||| | ||||| || Sbjct 5397283 CCGTCTTCAAGCTGTTTGCCTGCAAAGATCAATCGCTGCTGATCCGGAGGAATTCCCTCT 5397342 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || ||||| || ||| ||| | || | | |||| || || ||||| | || Sbjct 5397343 TTATCCTGAATCTTGGCTTTCACATTTTCAATGGTGTCAGATGCTTCAACTTCTAATGTG 5397402 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || || ||||| || | ||||| Sbjct 5397403 ATGGTTTTACCGGTAAGTGTTTTCACAAAAATTTGCAT 5397440 >seq8861 Length=554 Score = 111 bits (122), Expect = 4e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || || | ||| |||||||| ||||| ||||||||||| || | ||| || Sbjct 248 CTGAGACGTAGCACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTA 307 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||| || || || || | | |||||| || | | ||||| Sbjct 308 CGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCCC 367 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||| || ||| ||| | |||| | |||| || || ||||| || Sbjct 368 TCTTTGTCCTGAATCTTGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAACTTCTAGT 427 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || || || ||||| |||| |||||| Sbjct 428 GTGATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCAT 468 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||| |||||||| ||||| ||||||||||| || | ||| || | Sbjct 23 AGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGA 82 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || || || | | |||||| || | | ||||| || Sbjct 83 CCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGGAATTCCCTCT 142 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || ||||| || ||| ||| | || | | |||| || || ||||| | || Sbjct 143 TTGTCCTGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCCAATGTG 202 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || ||||| || | ||||||| Sbjct 203 ATGGTTTTACCGGTAAGTGTTTTCACAAAAATCTGCATT 241 >seq5054 Length=501 Score = 111 bits (122), Expect = 4e-19 Identities = 140/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| |||||||||||||| ||||||||||| || | | || | ||||| Sbjct 191 AGTACTAAATGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCC 132 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| ||||| ||||| || | |||||| || | | ||| |||||||| ||| Sbjct 131 TCCAACTGTTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAG-GATCCCTTCCTTGTCT 73 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||| ||| |||| | | ||||| ||| |||||||||||||| || Sbjct 72 TGGATTTTGGCTTTCACATTCTCAATTGTATCTGAGGGCTCGACTTCAAGAGTAATTGTC 13 Query 152073 TTGCCCGTGAG 152083 ||||| || || Sbjct 12 TTGCCAGTCAG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153178272171673