Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3660 300 2e-76 seq2103 300 2e-76 seq2461 185 9e-42 seq1909 183 3e-41 seq483 141 1e-28 seq1967 114 1e-20 seq2400 96.9 4e-15 seq4505 87.8 2e-12 >seq3660 Length=457 Score = 300 bits (332), Expect = 2e-76 Identities = 231/273 (85%), Gaps = 7/273 (3%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||| |||||||||||||||||||||| |||||| ||||||||||| ||| |||| | Sbjct 12 CTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCTGCCTTC 71 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 ||||||| | |||||||||||||||||||| || ||||||||| |||||||| ||| Sbjct 72 TGGGTTCACACCATTCTCCTGCCTCAGCCTCCCGACTAGCTGGGACTACAGGCACCCGCC 131 Query 8469 ACCACGCCAAGCTAA-----TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 |||||||| ||||| ||||||||||||||||||||| |||||||||| || | | Sbjct 132 ACCACGCCCGGCTAATTTTCTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCTTGGTAG 191 Query 8524 CCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGC 8583 ||||| ||||||||| |||||||||||| ||||| || |||| |||||||||||||| Sbjct 192 CCAGGATGGTCTCGATCTCCTGACCTCA--TGATCTGCCCACCTCAGCCTCCCAAAGTGC 249 Query 8584 TGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 ||||||||||||| |||||| || |||| |||| Sbjct 250 TGGGATTACAGGCGTGAGCCGCCACGCCCGGCC 282 >seq2103 Length=274 Score = 300 bits (332), Expect = 2e-76 Identities = 215/248 (87%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 8357 CCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCA 8416 |||||||||||| || | |||| |||||||||||||||| |||||| |||||| Sbjct 5 CCCAGGCTGGAG-------GCACGGTCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCA 57 Query 8417 AGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCC 8476 |||||||||||| ||||||||||| ||||||||||| |||||| |||||| ||| Sbjct 58 AGCTATTCTCCTACCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGTGCACCACCATGCC 117 Query 8477 AAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTC 8536 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 118 CAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTC 177 Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 |||||||||| |||| |||||| || ||||| ||||||||||||||||||||||||||| Sbjct 178 GAACTCCTGAGCTCAACTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGC 237 Query 8597 ATGAGCCA 8604 |||||||| Sbjct 238 ATGAGCCA 245 >seq2461 Length=348 Score = 185 bits (204), Expect = 9e-42 Identities = 132/151 (87%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 8466 GCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCC 8525 ||||| ||||| |||| |||||||| |||||||||||| |||||||||| | || ||| Sbjct 346 GCCACTACGCCCGGCTATTTTTTGTAGTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCC 287 Query 8526 AGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTG 8585 || ||||||||| ||||||||||| ||||||| || |||||||||||||||||||||| Sbjct 286 GGGATGGTCTCGATCTCCTGACCTC--GTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTG 229 Query 8586 GGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 ||||||||||| |||||||||||||| |||| Sbjct 228 GGATTACAGGCGTGAGCCACCGCGCCCGGCC 198 >seq1909 Length=207 Score = 183 bits (202), Expect = 3e-41 Identities = 141/165 (85%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 |||||||||||| ||| |||||||||||||||| |||||||||||||||||||| || || Sbjct 204 GCTCACTGCAACTTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAATA 145 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGA 8506 ||||||||||||||| |||| ||| || ||||| |||| ||||||||||||||| | Sbjct 144 ACTGGGATTACAGGCATGTGCCATCACACCTGGCTAA-TTTTCTATTTTTAGTAGAGACA 86 Query 8507 GGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCA 8551 ||||| ||||||||| ||||||||||| |||||| |||||| Sbjct 85 -GGTTTATCCATGTTGGTGAGGCTGGTCTCAAACTCCCAACCTCA 42 >seq483 Length=1310704 Score = 141 bits (156), Expect = 1e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| | || || ||||| || || | ||||||||||||||||| |||||| || || Sbjct 166381 ATCTCTGATGTAGGTATCTATAAGCAGGGAATACATTTCAGAATGAACATTTTCCATGGC 166322 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTT 23891 ||||| || ||||| |||||||| || |||| | |||||| || | ||||||| | Sbjct 166321 TATCTGGAAGCCATAGAAACATCTTGCCTCAGTGACTTGAACTTCTTGTGAAAATCTCTC 166262 Query 23892 AGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTAT 23951 | | || ||||| || ||||| ||||| ||| |||||||||||||| |||| || || Sbjct 166261 AACCAAGTTTTCATTTACAATGCCATCTGAAGCCGCAAAGAAAGCAAGGACATGCTTGAT 166202 Query 23952 AAAATGTCTTTCA 23964 |||||||| ||| Sbjct 166201 GAAATGTCTCTCA 166189 Score = 86.0 bits (94), Expect = 7e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 |||||||| ||| | ||||||| ||||| | ||| ||||| | || || ||||| Sbjct 173490 TCATCCCTGGAAATAAGTTCATTACTGAATGTAAGTCCCGGCATAAGGCCCCGCTTTTTG 173431 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| || || | |||||| || || || || || || || ||||| |||||||| Sbjct 173430 AGCCAGAAGATGGAAGCAAAACTGCCTGAGAAAAAGATTCCTTCTACAGCTGCAAAGGCA 173371 Query 23653 ACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCC 23712 |||| | | ||||||||||||| | | | |||||| | | | ||||| || Sbjct 173370 ACAATCCTTTCACCAAATGTTGCAGTCTTGCTTGCAATCCACTGTAGAGCCCAATCTGCT 173311 Query 23713 TTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAA 23757 ||| |||||||| || || |||| || || || |||||| Sbjct 173310 TTCTTCTTTACACAGGGAAGAGTCTCAACCGCATTAAACAGAAAA 173266 >seq1967 Length=225 Score = 114 bits (126), Expect = 1e-20 Identities = 142/194 (73%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 8424 CTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAA 8483 |||| ||| ||||||| |||||||||| | ||||||| ||||||| | |||| Sbjct 1 CTCCCACCTTAGCCTCCTGAGTAGCTGGAACCACAGGCACGCACCACCACAACCAGCTTG 60 Query 8484 TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 8543 || || |||| ||| | | || || | |||||| |||||||||| | |||| Sbjct 61 TTATTTCATTT---GTAAACATGAAGTCTCTCTATGTTGCTGTGGCTGGTCTCAAGCTCC 117 Query 8544 TGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCC 8603 || |||| | |||| || ||||| |||||||||||||||||||||| |||| ||||| Sbjct 118 TGGGCTCAAGCAATCCTCCAGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCT 177 Query 8604 ACCGCGCCTGGCCC 8617 | | |||||| || Sbjct 178 TCTGTGCCTGGTCC 191 >seq2400 Length=336 Score = 96.9 bits (106), Expect = 4e-15 Identities = 72/82 (88%), Gaps = 3/82 (4%) Strand=Plus/Plus Query 8539 ACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCC--AAAGTG-CTGGGATTACAGG 8595 |||||||| |||| ||||| | |||||||||||||||| |||||| ||||||||||||| Sbjct 1 ACTCCTGATCTCAGGTGATACGCCTGCCTCGGCCTCCCAAAAAGTGCCTGGGATTACAGG 60 Query 8596 CATGAGCCACCGCGCCTGGCCC 8617 ||||||||||| |||| |||| Sbjct 61 CATGAGCCACCACGCCCAGCCC 82 >seq4505 Length=487 Score = 87.8 bits (96), Expect = 2e-12 Identities = 187/274 (68%), Gaps = 9/274 (3%) Strand=Plus/Minus Query 8346 TCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCC 8405 ||||||| |||| | |||||||| ||||| |||| ||||||||| |||| | Sbjct 459 TCACTCTATTGCAGATGCTGGAGTATAGTGGTGGGATCATACCTCACTGCAGCCTCGAAC 400 Query 8406 TCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAA 8465 | | ||| | ||| || |||| |||||||| |||||| ||| ||||| Sbjct 399 TTCTGGGCTTAAGTGATCCTCCCATTTCAGCCTCTCAAGTAGCCAGGACCACAGGTGTGC 340 Query 8466 GCCACCACGCCAAGCTAATTTTTGTATTTTTA-GTAGAGAGAGGGTTTCACCATGTT--- 8521 |||||| ||| ||||||||||||||||| | | |||| || || ||| || Sbjct 339 ACCACCATGCCTGGCTAATTTTTGTATTTTCATTTTTGGAGATGGAATC-TCATTTTACA 281 Query 8522 GGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGT 8581 |||||||||||| |||||||| ||||| | | | ||||| | || | | Sbjct 280 TCCCAGGCTGGTCTGGAACTCCTAGCCTCAAACAGTTCTTCCGCCTCAGTCTTC---TGA 224 Query 8582 GCTGGGATTACAGGCATGAGCCACCGCGCCTGGC 8615 | |||||||||||| ||||||| | | |||||| Sbjct 223 GTTGGGATTACAGGTGTGAGCCA-CACACCTGGC 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521204682088200