Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20mori_20[refseq_20GCF_5F000151625.1_202008-04-28] 43,463 sequences; 481,819,406 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq747 102 8e-17 seq466 89.7 5e-13 seq8861 82.4 7e-11 >seq747 Length=8313734 Score = 102 bits (112), Expect = 8e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 |||||||| |||| ||| || || || || ||||| || || ||||| | || || Sbjct 5399503 AGACGTAATACCAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCGGATAATGTCCGT 5399562 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || || || || || ||||| ||||| ||||| || || | |||| || ||| Sbjct 5399563 CCGTCTTCAAGTTGTTTCCCAGCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCT 5399622 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 ||||| ||| ||||||||| || | | |||||| | || || || | || Sbjct 5399623 TTGTCT-TGAATTTTTGCTTTTACATTTTCTATGGTGTCGGATGCTTCGACTTCTAATGT 5399681 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| |||||||| || || || ||||| |||||||||||| Sbjct 5399682 TATGGTTTTACCAGTGAGAGTTTTTACAAAAATCTGCATG 5399721 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||||||||| | ||| || || ||||| ||||| || ||||| || Sbjct 4903670 CCTCCTCGTAGACGTAACACTAAATGGAGTGTAGATTCCTTTTGAATATTGTAGTCTGAC 4903611 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| |||| || ||||||||||| || || || || |||||||| || | ||| Sbjct 4903610 AAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGA 4903551 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | || ||||| ||| || ||||| | | ||||| | || || Sbjct 4903550 ATTCCTTCTTTGTCTTGGATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCTACT 4903491 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || || ||||| || || ||||| ||||||||| Sbjct 4903490 TCCAAAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAGATCTGCATG 4903443 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || ||| || || |||||||| ||||| || Sbjct 4903443 GCCTCCACGAAGACGCAGTACAAGATGGAGTGTGGATTCTTTTTGAATGTTGTAGTCTGA 4903384 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| |||| || ||||||||||| || || || || |||||||| || | || Sbjct 4903383 CAAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGG 4903324 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || | || ||||| ||| || ||||| | | ||||| | |||||| Sbjct 4903323 AATTCCTTCTTTGTCTTGGATCTTCGCCTTCACATTCTCAATTGTGTCCGAAGGCTCCAC 4903264 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || || || || || || || ||||||||| Sbjct 4903263 TTCTAAAGTGATGGTCTTGCCGGTTAGAGTTTTCACAAAGATCTGCATG 4903215 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||||||||||| |||||| || || ||||| ||||| ||||| || | || || Sbjct 5398819 AGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGA 5398878 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || |||| ||||| || || | ||||| | ||| Sbjct 5398879 CCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCT 5398938 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| | || |||| || | | ||||| | || || || | || Sbjct 5398939 TTGTCC-TGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAACTTCTAGTGT 5398997 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||||||| || || || || || || ||||||||| Sbjct 5398998 GATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCATG 5399037 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||||||||||| |||||| || || ||||| ||||| ||||| || | || || Sbjct 5399275 AGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGG 5399334 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || |||| ||||| || || | ||||| | ||| Sbjct 5399335 CCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCT 5399394 Query 41765 TTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| | || || |||| | | ||||| | || || || | || Sbjct 5399395 TTGTCC-TGAATCTTGGCTTTCACATTCTCAATGGTGTCAGATGCTTCAACTTCTAGTGT 5399453 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||||||| || || || || || || |||||||| Sbjct 5399454 GATGGTTTTACCGGTAAGTGTTTTCACAAAGATCTGCAT 5399492 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||||||||||| |||||| || || ||||| ||||| ||||| || | || || Sbjct 5397451 AGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGA 5397510 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || |||| ||||| || || | ||||| | ||| Sbjct 5397511 CCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCT 5397570 Query 41765 TTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| | || || |||| | | ||||| | || || || | || Sbjct 5397571 TTGTCC-TGAATCTTGGCTTTCACATTCTCTATGGTGTCAGATGCTTCAACTTCTAGTGT 5397629 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||||||| || || || || || || || |||||| Sbjct 5397630 GATGGTTTTACCGGTAAGTGTTTTCACAAAGATTTGCATG 5397669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||||||||||| |||||| || || ||||| ||||| ||||| || | || || Sbjct 5397907 AGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGA 5397966 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || |||| ||||| || || | ||||| | ||| Sbjct 5397967 CCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCT 5398026 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| | || |||| || | | ||||| | || || || | || Sbjct 5398027 TTGTCC-TGAATCTTGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAACTTCTAGTGT 5398085 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||||||| || || || || || || || |||||| Sbjct 5398086 GATGGTTTTACCGGTAAGTGTTTTCACAAAGATTTGCATG 5398125 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||||||||||| |||||| || || ||||| ||||| ||||| || | || || Sbjct 5398363 AGACGTAACACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAATGTACGA 5398422 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || |||| ||||| || || | ||||| | ||| Sbjct 5398423 CCATCTTCAAGCTGTTTGCCCGCAAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCT 5398482 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| | || |||| || | | ||||| | || || || | || Sbjct 5398483 TTGTCC-TGAATCTTGGCTTTCACATTTTCTATGGTGTCAGATGCTTCAACTTCTAGTGT 5398541 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||||||| || || || || || || || |||||| Sbjct 5398542 GATGGTTTTACCGGTAAGTGTTTTCACAAAGATTTGCATG 5398581 >seq466 Length=1632705 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || ||||| || || ||| || ||||| ||||||||||| || || ||||| | || Sbjct 1583298 AAAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTGAAAGAGTGCGGCCATCT 1583357 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || | || || ||||| || || || || |||||||| | |||| | ||||||| | Sbjct 1583358 TCTAATTGTTTCCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGT-C 1583416 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || |||| |||| || | | ||||||| | |||||||||| || || || Sbjct 1583417 TTGGATTTTAGCTTTGACATTTTCGATAGTGTCGGAAGCTTCCACCTCCAATGTAATGGT 1583476 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || || || ||||| || ||||| Sbjct 1583477 CTTCCCCGTAAGGGTTTTGACGAATATTTGCAT 1583509 >seq8861 Length=554 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | || |||| |||||| || || ||||| ||||| ||||| || Sbjct 13 GCCACCACGCAGTCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGA 72 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || | || || ||||| ||||| || || |||| ||||| || || | ||| Sbjct 73 TAATGTACGACCATCTTCAAGCTGTTTGCCCGCAAAAATCAATCGCTGCTGATCTGGGGG 132 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||| |||||| ||| | || |||| || | | ||||| | || | Sbjct 133 AATTCCCTCTTTGTCC-TGAATCTTGGCTTTCACATTTTCGATGGTGTCAGATGCTTCAA 191 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || |||||||| || || || || || ||||||||||| Sbjct 192 CTTCCAATGTGATGGTTTTACCGGTAAGTGTTTTCACAAAAATCTGCAT 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462052836015600