Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4459 609 3e-169 seq409 111 2e-19 seq1404 86.0 7e-12 >seq4459 Length=154925 Score = 609 bits (674), Expect = 3e-169 Identities = 1207/1777 (68%), Gaps = 20/1777 (1%) Strand=Plus/Minus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 || || | ||| ||||| || | | | ||| ||||| ||||||| ||| ||||| || Sbjct 144009 TTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTTGTACGTAAATAATACATGCCT 143950 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||||| ||| | |||| | |||||||| || || ||||| |||| | || Sbjct 143949 GTTTTTAAACCCATTTTCCAAGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGT 143890 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || |||| ||| ||||| | ||| |||||||| || || || || || || || |||||| Sbjct 143889 TCAGCTACATGAATATTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCC 143830 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 53037 || | || | || || | ||||||||| | || ||||| || || || | |||| Sbjct 143829 ATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCTGA-TATC 143771 Query 53038 TTCTGGAAG-GTTTG--TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGAT 53094 || |||| |||| ||||||||| || ||| || | ||| ||| || || Sbjct 143770 TTTGGGAATAGTTTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGATTTTTCAT 143711 Query 53095 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 53154 ||||| | |||||| | | | || ||| |||| | ||||| ||||||| ||||| Sbjct 143710 GTCATCGTCCCATAAATCTGCTTGAGTCAAATCTCTTAAAAGATGATGATTAACGACTTG 143651 Query 53155 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 53214 |||||| || || ||||||| | ||| ||||| || | ||||| | || || Sbjct 143650 AAATTCGCCTGATAATACTCGTCTTTGGTATATATTTGAAGTGAATGGTTCAAAGGATTC 143591 Query 53215 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 53274 |||||| || | || ||||| || ||||| || |||||||| |||| | | | ||| Sbjct 143590 ATTATTGCCAAGTATCTGAGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAATT 143531 Query 53275 TCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 53332 | || || ||||| | ||||| ||||| |||| |||||| ||| ||||| | Sbjct 143530 ACGAATTCC--ATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTG 143473 Query 53333 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 53391 || ||| | ||| || | || | | || | ||| |||| Sbjct 143472 GGAGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTA-CCTTCATA 143414 Query 53392 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 53451 || | || ||| || ||||| |||| |||||| || || || || || |||||||| Sbjct 143413 TGAACTATAAACTCCCTCTTTCTCTGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATA 143354 Query 53452 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 53511 || || || || |||| | |||| ||||| || ||| | || || Sbjct 143353 GATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCG 143294 Query 53512 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 53571 | || | ||| || || ||||| ||||| || |||||||| || |||||||||| | | Sbjct 143293 CATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCAT 143234 Query 53572 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTT 53631 ||| ||| ||| ||||||||||| ||||||||||| | ||||||||||||||| ||||| Sbjct 143233 ATTGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTAAGGTT 143174 Query 53632 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTC---CATCTAT 53688 | || | ||| || || || | || ||||| || || |||| | Sbjct 143173 TTGTGTTATGATTTTTGTAACTTCTTTTAACTTTCCAAAATTGTATGTTCTATCATCATT 143114 Query 53689 TACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 53748 ||||||||| ||||| |||||||| || | |||||| || ||||| |||| | | Sbjct 143113 TACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGATGT 143054 Query 53749 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 ||||| || ||| || || || ||||||||||| || || ||||||| ||||| ||||| Sbjct 143053 ATATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATT 142994 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 ||||||| ||||||| | ||| || || | |||||||| || || ||||||| || | Sbjct 142993 ACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGC 142934 Query 53869 TTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCT 53928 ||||| ||| || ||||| | || | ||| ||| | | || | |||||| || Sbjct 142933 TTCTACAATAGCCTTCCATAAAACTTGTGCCCTTACTT--GTTTGACAAATCTTTTTTCA 142876 Query 53929 TTCGTATAGTGT--ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 53986 ||| ||| | | ||||| ||||||||| ||||||||| || |||| |||||| Sbjct 142875 TTCTCATACTTTTCATACAGAGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAGGA 142816 Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 54046 || |||| ||||||||||| ||| | | | | | | |||| ||||||||| | | Sbjct 142815 CAGTCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAA 142756 Query 54047 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 54106 || || ||||| | ||| ||| | || || | || | ||| || || || |||||| Sbjct 142755 TCTGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTGCCAGTATTC 142696 Query 54107 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166 ||||| ||||| | ||| | | | ||| |||||||| ||||| || |||| | | Sbjct 142695 TTTTTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAAT 142636 Query 54167 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226 | || || || ||||| || || ||||||| ||||| || ||| | ||||| ||||| Sbjct 142635 GCCCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTT 142576 Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286 |||||||| | || ||||| ||| ||||||| || || | ||| | | || | || Sbjct 142575 AACATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAGCT 142516 Query 54287 CGAATATTACTAA-TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCG 54345 | ||| || ||| || || || || ||||| |||||| || || || ||| | Sbjct 142515 CTGATACAGTGAACATGA-AGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTG 142457 Query 54346 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||| | || ||||| || ||||| ||||| ||||| ||||| | || ||||| Sbjct 142456 TTTCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGA 142397 Query 54406 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 54465 |||| ||| | | ||| | ||| |||||| |||||| ||||| || || | Sbjct 142396 TGACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAAATA 142337 Query 54466 TTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCC 54525 || ||||| | || || || || | |||||||| || || || | ||| ||||| Sbjct 142336 CTTCTCAGACAATAAGTTATAGGTGTTAATAGCTGAATCAATGTCTTCTCCATGTATTCC 142277 Query 54526 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 | || |||||||||| ||| || || ||||| ||| Sbjct 142276 AATAGCTACACGCATTAGCATATGTTGTGGTCTCTCA 142240 >seq409 Length=488447 Score = 111 bits (122), Expect = 2e-19 Identities = 135/182 (74%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || |||||||| || | |||||| || || ||||| || || || ||| Sbjct 75215 CCAGGCATGAGTCCACGCTTCTTTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAA 75274 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGT--CATGTA 24312 || || ||||| || ||||| || |||| | ||||||| | ||| | | | || | Sbjct 75275 ATACCCTCTACAGCTGCAAATGCTATAATACGTTCTCCAAACGTGGCAGTTTTGCTTGCA 75334 Query 24313 -TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||| | | | ||||| || ||||||||||| |||||||||| || |||||||||||| Sbjct 75335 ATCCATTGTAGTGCCCAGTCCGCCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTA 75394 Query 24372 AA 24373 || Sbjct 75395 AA 75396 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/111 (78%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 24609 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 24668 ||| || || |||| |||| |||||||||||| || |||||||| || || || || ||| Sbjct 76494 TCAATGTTACCTTT-GATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTT 76552 Query 24669 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 24719 || ||||| | ||| || || |||| || || || || |||||||||||| Sbjct 76553 TTGTACATTTCCCAAATATCTGGATACTGGATAGGGAATATAACAAATCTA 76603 >seq1404 Length=248339 Score = 86.0 bits (94), Expect = 7e-12 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 21883 TCCGGTTGATCCAAACCCTTGATCTCCTCTATCTGTACTATCT-AGAGATTG--TACTTC 21939 ||| ||||| ||||||||| |||| |||| | || ||||| | |||||| |||||| Sbjct 176004 TCCAGTTGAACCAAACCCTCCATCTGCTCTTT---TAGTATCTGAAAGATTGGCTACTTC 175948 Query 21940 TTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATT 21999 |||| || || || || || || | | ||||| ||||| |||||||| || | || Sbjct 175947 CATCAGCTCGGGGTAGTAAATTTTTTCACATATTAGTTGAGCAATTCTATCACCTTTTTT 175888 Query 22000 TACATTAAATGTATATTTTCCATTATT-AATAAGAATGACTCCTATATTTCCCCTATAAT 22058 ||| ||| || | | | ||| ||||| | ||||| | |||||| ||||||| Sbjct 175887 TACTACAAAGTCATCATCTGAGTGATTGAATAATACA-ACTCCAACATTTCCTCTATAAT 175829 Query 22059 CTTCGTCTATTACACC 22074 |||| ||||| ||||| Sbjct 175828 CTTCATCTATGACACC 175813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593422074874320