Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq4146 284 1e-71 seq3626 109 5e-19 seq4182 102 7e-17 >seq4146 Length=100757 Score = 284 bits (314), Expect = 1e-71 Identities = 365/501 (73%), Gaps = 2/501 (0%) Strand=Plus/Plus Query 105997 gggTTAGCCCCTTTGCCGCCCGGAAACTCCCAATCGATGTCTACACCGTCAAAGAATTTC 106056 || ||||| ||||| || || || ||||||||||| ||||| ||||| || ||||||||| Sbjct 16135 GGATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAGAATTTC 16194 Query 106057 CACACTTGCAGAAATTCCTTAACCGAATCTACAAAAACGTTTCTTTTTTCAACATCGTGC 106116 || ||| || || || || || || | |||||| | ||||||| | ||| | Sbjct 16195 CAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAAACGATCTCTTTTTACCTTATCATCA 16254 Query 106117 ATAAAATAAAATGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAAATGG 106176 | ||| || ||||| |||| || ||||||||||| ||||| ||||||| || |||| Sbjct 16255 AAAAAGTAGAATGGATCTGCCAGTGTCCAGCCTCCGATTGATGGAAGAACCTTCAAATCA 16314 Query 106177 GGGTTTGCTAATTTTGCCGCCATCAACTGTCCAAAATTGCCTTTATACGGCTCGTTCCAA 106236 || | ||| ||| | ||||| |||||||| |||||||| || || |||||||| Sbjct 16315 GGTCTAGCTTGTTTCAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCAG 16374 Query 106237 GCGGACACACCTTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGAATGGCAACTTTG 106296 | ||||| ||| || || |||||||||| || ||||| || || || || | ||||||| Sbjct 16375 GAGGACAAACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCATGGATAGAAACTTTG 16434 Query 106297 AAATCTTCGCGTCCCTTGCACGATCTTTGCAAAGATTCAAAGCTTCCGGGTATCGTTTTG 106356 || || || || || |||| ||||||||||||| || || ||||| || ||| Sbjct 16435 AAGTCCTCTCGCCCGCTGCAAGATCTTTGCAAAGCTTGGAAACTTCCTTCGATTTCTTTT 16494 Query 106357 AGGGCGTCGTTTATTCCATCGCCGCCGCAGATGGGTATGAAACCATACAACAAG-TGTGA 106415 | |||||| ||||| || ||||| |||||||| || || || || || ||| |||| Sbjct 16495 AAACTGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTA-AAGAAGATGTGT 16553 Query 106416 TAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGTTGCGCCCGTACACACCCCACTCAAC 106475 | |||||| | ||| || || ||||| || || || | ||| ||||||||||| || Sbjct 16554 AAGATTTGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACACCCCACTCCAC 16613 Query 106476 AAAGTACGCAGCGACAATTTT 106496 ||| || || |||| | ||| Sbjct 16614 AAAATAAGCTCCGACGACTTT 16634 >seq3626 Length=201135 Score = 109 bits (120), Expect = 5e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| |||||| | || ||| | || || |||||||| ||| || || || Sbjct 59061 AAAAATGCAGATATTCGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAGCC 59120 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || || | | || | || |||||| || ||||||||| | || || Sbjct 59121 ATCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCGA 59180 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATT--CCAAAACTATGGCCGAT 29135 ||| || |||||||||| || || ||||| || |||||| | | ||| | | ||| Sbjct 59181 TCAGCAGCGACTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGCACACTCT--CTGAT 59238 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| ||||| ||||||||||| |||||| |||| ||||| |||||||| || Sbjct 59239 TACAACATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGG 59291 >seq4182 Length=188933 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 || |||||| |||||| | ||||| | ||||| |||||||| ||| ||| ||| | Sbjct 74502 AACAATGCAGATATTCGTAAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGC 74443 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || || | | || | || |||||| |||||||||||| | || || Sbjct 74442 TTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGA 74383 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| ||| | | |||||||| || ||||| ||||||||| | || | |||| || Sbjct 74382 TCAGCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTA 74323 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||||||| ||||| | || | ||||| | ||| ||||||| Sbjct 74322 CAATATTCAGAAGGAGTCTACGTTACATCTTGTGTTGAGGTTAAGAGGAGG 74272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428125312096145