Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq4146 279 4e-70 seq3626 109 5e-19 seq4182 93.3 3e-14 >seq4146 Length=100757 Score = 279 bits (308), Expect = 4e-70 Identities = 364/501 (73%), Gaps = 2/501 (0%) Strand=Plus/Plus Query 97764 GGGTTAGCCCCTTTGCCGCCCGGAAATTCCCAATCGACGTCGACACCATCAAAAAATTTC 97823 || ||||| ||||| || || || || |||||||| | ||| |||||||| || |||||| Sbjct 16135 GGATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAGAATTTC 16194 Query 97824 CACACTTGCAAAAATTCCTTAACCGACTCTACAAAAACGTTTCTTTTTTCAACGTCGTGC 97883 || ||| | || || || || || | |||||| | ||||||| | || | Sbjct 16195 CAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAAACGATCTCTTTTTACCTTATCATCA 16254 Query 97884 ATGAAATAGAACGGGTCCGACAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAGATGT 97943 | || ||||| || || | ||| ||||||||||| ||||| ||||||| || | || Sbjct 16255 AAAAAGTAGAATGGATCTGCCAGTGTCCAGCCTCCGATTGATGGAAGAACCTTCAAATCA 16314 Query 97944 GGGTTTGCTAATTTCGCCGCCATCAATTGTCCAAAATTGCCTTTGTACGGTTCGTTCCAA 98003 || | ||| |||| | ||||| ||||||||| ||||||||||| ||||||||||| Sbjct 16315 GGTCTAGCTTGTTTCAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCAG 16374 Query 98004 GCGGACACGCCCTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGGATGGCAACTTTG 98063 | ||||| ||||| || |||||||||| || ||||| || || ||||| | ||||||| Sbjct 16375 GAGGACAAACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCATGGATAGAAACTTTG 16434 Query 98064 AAATCTTCGCGTCCCCTGCACGATCGTTGCAGAGCTTCAAAACTTCCGGGTATTGTTTTG 98123 || || || || || ||||| |||| ||||| ||||| |||||||| ||| ||| Sbjct 16435 AAGTCCTCTCGCCCGCTGCAAGATCTTTGCAAAGCTTGGAAACTTCCTTCGATTTCTTTT 16494 Query 98124 AGGGCGTCGTTTATTCCATCGCCACCGCAGATGGGTATGAAACCGTACAACAAG-TGCGA 98182 | |||||| ||||| || || || |||||||| || || ||||| || ||| || | Sbjct 16495 AAACTGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTA-AAGAAGATGTGT 16553 Query 98183 TAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGCTGCGCCCGTACACACCCCACTCGAC 98242 | |||||| | ||| || || ||||| || || | | ||| ||||||||||| || Sbjct 16554 AAGATTTGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACACCCCACTCCAC 16613 Query 98243 AAAGTACGCAGCGACAATTTT 98263 ||| || || |||| | ||| Sbjct 16614 AAAATAAGCTCCGACGACTTT 16634 >seq3626 Length=201135 Score = 109 bits (120), Expect = 5e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 ||||||||| |||||| | || ||| | || || |||||||| ||| || || || Sbjct 59061 AAAAATGCAGATATTCGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAGCC 59120 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | || || | | || | || |||||| || ||||||||| | || || Sbjct 59121 ATCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCGA 59180 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGAT 25208 ||| || |||||||||| || || ||||| | |||||| | | ||| | | ||| Sbjct 59181 TCAGCAGCGACTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGCACACTCT--CTGAT 59238 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| ||||||||||||||||| |||||| |||| ||||| |||||||| || Sbjct 59239 TACAACATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGG 59291 >seq4182 Length=188933 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 || |||||| |||||| | ||||| | ||||| |||||||| ||| ||| ||| | Sbjct 74502 AACAATGCAGATATTCGTAAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGC 74443 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | || || | | || | || |||||| |||||||||||| | || || Sbjct 74442 TTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGA 74383 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 ||| ||| | | |||||||| || ||||| |||||||| | || | |||| || Sbjct 74382 TCAGCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTA 74323 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||| ||||| ||||| | || | ||||| | ||| ||||||| Sbjct 74322 CAATATTCAGAAGGAGTCTACGTTACATCTTGTGTTGAGGTTAAGAGGAGG 74272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410594739195626