Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4182 143 3e-29 seq2492 127 2e-24 seq3626 125 7e-24 seq2867 87.8 2e-12 >seq4182 Length=188933 Score = 143 bits (158), Expect = 3e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 ||| |||||| |||||||||||||| || ||||| |||||||||||| |||| || || | Sbjct 74503 GAACAATGCAGATATTCGTAAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGG 74444 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||| | | ||| | || | ||||||| || ||||| || || || ||| Sbjct 74443 CTTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGG 74384 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | |||||||| | |||| || || ||||||||||| || | ||||| | ||||| Sbjct 74383 ATCAGCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACT 74324 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| || ||||||||| | ||| | ||||| |||||| | || || || || Sbjct 74323 ACAATATTCAGAAGGAGTCTACGTTACATCTTGTGTTGAGGTTAAGAGGAGG 74272 >seq2492 Length=83244 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || |||||||||||||| | || || || |||| | Sbjct 40316 ATGCAAATTTTCGTCAAGACCTTAACTGGCAAAACCATCACACTTGAAGTTGA-GCCATC 40258 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| | |||| ||||| | ||||||||||| ||||| | ||||| Sbjct 40257 AGACACCATAGAAAATGTTAAGGCTAAAATCCAAGACAAAGAGGGTATCCCACCAGACCA 40198 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| ||||| || || | ||||| || |||||||| Sbjct 40197 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTATCGGACTACAA 40138 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| || || |||| || ||| |||| || | |||||||| ||| Sbjct 40137 TATCCAAAAAGAATCCACTCTCCATTTAGTACTGAGATTGAGGGGTGGC 40089 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | || |||||||||||||| | || || || |||| Sbjct 41685 AATGCAGATTTTCGTCAAGACCTTAACTGGCAAAACCATCACACTTGAAGTTGA-GCCAT 41627 Query 40749 C-GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | |||| | | ||| | || | ||||||| ||||||||||| ||||| | |||| Sbjct 41626 CAGACACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACC 41567 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | ||||||| || ||||| ||||| || || | ||||| ||| ||||||| Sbjct 41566 AGCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCGGACTACA 41507 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | |||||||| || |||| || ||| | || || | ||||| || || Sbjct 41506 ATATCCAGAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 41458 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || |||||||||||||| | || || || |||| | Sbjct 40544 ATGCAGATTTTCGTAAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGA-GCCATC 40486 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | |||| ||||| | ||||||||||| ||||| | ||||| Sbjct 40485 AGACACTATTGAAAATGTTAAGGCCAAAATCCAAGACAAAGAGGGTATCCCACCAGACCA 40426 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 40425 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGCACACTCTCGGACTACAA 40366 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| || |||| || ||| | || || | ||||| || || Sbjct 40365 TATCCAGAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 40318 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || |||||||||||||| | || || || |||| | Sbjct 41000 ATGCAGATTTTCGTAAAGACCTTAACTGGCAAAACCATCACACTTGAAGTTGA-GCCATC 40942 Query 40750 G-ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 | ||| | ||| | |||| ||||| | ||||||||||| ||||| | ||||| Sbjct 40941 GGACACTATTGAAAATGTTAAGGCCAAAATCCAAGACAAAGAGGGTATCCCACCAGACCA 40882 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || || || ||||| || || | ||||| ||| |||||||| Sbjct 40881 GCAGAGGCTCATCTTTGCCGGAAAGCAGCTTGAAGATGGTCGCACACTCTCGGACTACAA 40822 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || || |||| || ||| | || || | ||||| || || Sbjct 40821 TATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 40774 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || |||||||||||||| | || || || |||| | Sbjct 41228 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGA-GCCATC 41170 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | |||| ||||| | ||||||||||| ||||| | ||||| Sbjct 41169 AGACACTATTGAAAATGTTAAGGCCAAAATCCAAGACAAAGAGGGTATCCCACCAGACCA 41110 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 41109 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGCACACTCTCAGACTACAA 41050 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || || |||| || ||| | || || | ||||| || || Sbjct 41049 TATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 41002 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || ||||| || ||||| |||||||| || ||| | || || ||| | Sbjct 41915 AACATGCAGATTTTTGTAAAGACCCTCACCGGCAAAACTATTACCCTAGAGGTAGAACCT 41856 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | |||| ||||| | ||||||||||| ||||| | ||| Sbjct 41855 TCAGACACTATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGTATCCCGCCAGAC 41796 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || || || ||||| || || | ||||| ||| |||||| Sbjct 41795 CAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGTCGCACACTCTCTGACTAC 41736 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| || || |||| || ||| | || || | ||||| || || Sbjct 41735 AATATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 41686 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || |||||||||||||| | || || || | | Sbjct 40772 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCTTCA 40713 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||||| | ||||||||||| ||||| | |||||| Sbjct 40712 GACACTATTGAAAATGTTAAGGCCAAAATCCAAGACAAAGAGGGTATCCCACCAGACCAG 40653 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 40652 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCGGACTACAAT 40593 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || || |||| || ||| | || || | ||||| || || Sbjct 40592 ATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 40546 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||||||||| || | || || || |||| | Sbjct 41456 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAAACCATTACTCTTGAAGTTGA-GCCATC 41398 Query 40750 G-ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 | ||| | ||| | |||| ||||||| ||||||||||| ||||| | ||||| Sbjct 41397 GGACACTATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCA 41338 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| ||||| || || | || || ||| |||||||| Sbjct 41337 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGTACACTCTCTGACTACAA 41278 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || || |||| || ||| | || || | ||||| || || Sbjct 41277 TATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 41230 >seq3626 Length=201135 Score = 125 bits (138), Expect = 7e-24 Identities = 158/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| ||||| || || || || ||| | || || || |||| Sbjct 59292 AATGCAAATTTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGA-GCCAT 59350 Query 40749 C-GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | ||||| | |||| ||||| | |||||||| |||||||| ||||| Sbjct 59351 CAGATACTATCGAAAACG-TAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGAC 59409 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||| ||||| | || || ||||||||||| |||| || ||||| |||||| Sbjct 59410 CAGCAACGGCTCATTTTTGCTGGAAAACAGCTGGAAGACGGACGTACCCTTTCTGACTAC 59469 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || ||| |||| || || || || Sbjct 59470 AACATTCAAAAAGAGTCCACTCTTCACCTTGT 59501 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||| || | || || ||| | | Sbjct 59521 ATGCAGATCTTTGTTAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTTGAACCTTCA 59580 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | ||||| | ||||| || |||||||| | ||||| Sbjct 59581 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 59640 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| || || ||||| |||| || | ||| ||||| ||||||||| Sbjct 59641 CAGCGACTCATCTTTGCTGGAAAACAATTGGAAGATGGGCGAACCCTGTCTGACTACAAC 59700 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || || ||| |||| || || || || |||| Sbjct 59701 ATTCAAAAAGAGTCCACTCTTCACCTTGTACTGCG 59735 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || || || || | || || ||| | | Sbjct 59749 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACTATTACTTTGGAAGTTGAACCTTCA 59808 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | ||||| | ||||| || |||||||| | ||||| Sbjct 59809 GACACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 59868 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| || || ||||| ||||| || | ||| ||||| ||||||||| Sbjct 59869 CAGCGACTCATCTTTGCTGGAAAACAACTGGAAGATGGGCGAACCCTGTCTGACTACAAC 59928 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || || ||| |||| || || || || Sbjct 59929 ATTCAAAAAGAGTCCACTCTTCACCTTGT 59957 >seq2867 Length=333652 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 139379 CACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGGGTGCACGTCGGCCGGCGAG 139438 || || |||||| | || ||||| || ||| | ||||| ||||||||||| || | | Sbjct 230986 CATGGGTTCCACATCCATGAGTTTGGAGACAACACAAACGGCTGCACGTCGGCGGGGGCG 230927 Query 139439 CACTTCAACCCCGCGCGCCGGGACCACGGCGCGCCCGACGCCGAGATCAGGCACGTCGGC 139498 |||||||| ||| || | ||| |||||||| || ||||| |||| ||||| || Sbjct 230926 CACTTCAATCCCCGGCAACAGGAGCACGGCGCCCCTGACGCATCCGTCAGACACGTAGGT 230867 Query 139499 GACCTGGGCAACCTCGAG 139516 || ||||||||| | ||| Sbjct 230866 GATCTGGGCAACATTGAG 230849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514959278353840