Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3626 152 8e-32 seq4182 131 3e-25 seq2492 122 1e-22 seq6007 84.2 3e-11 >seq3626 Length=201135 Score = 152 bits (168), Expect = 8e-32 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| ||||| | |||||||| || || ||||| ||||| | ||| |||| || Sbjct 59064 AATGCAGATATTCGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAGCCATC 59123 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| |||||||| || ||||||||||| || || ||||| Sbjct 59124 GGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCGATCA 59183 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | ||||| || ||||| ||||| | || ||| | || ||| | ||||| || Sbjct 59184 GCAGCGACTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGCACACTCTCTGATTACAA 59243 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| ||||| || | || ||||| ||||| ||||||||||| || ||| || Sbjct 59244 CATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGAATGCAAATTT 59302 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || || ||||| ||| | || ||||| | Sbjct 59749 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACTATTACTTTGGAAGTTGAACCTTCA 59808 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| ||||| || || || ||||| || || || || ||| Sbjct 59809 GACACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 59868 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||||||| | || ||| | ||||| | || || || Sbjct 59869 CAGCGACTCATCTTTGCTGGAAAACAACTGGAAGATGGGCGAACCCTGTCTGACTACAAC 59928 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||| | || | ||| | ||| | ||||||||||| Sbjct 59929 ATTCAAAAAGAGTCCACTCTTCACCTTGTTCTCCGTCTGCGAGGTGGTAT 59978 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || ||||| || || || || |||| | || || Sbjct 59292 AATGCAAATTTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAGCCATC 59351 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || || |||| |||||| ||||| |||||||| || || || || || Sbjct 59352 AGATACTATCGAAAACGTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCA 59411 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||| |||||||| |||||||| | || || | || || | || || || Sbjct 59412 GCAACGGCTCATTTTTGCTGGAAAACAGCTGGAAGACGGACGTACCCTTTCTGACTACAA 59471 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||| | || | ||| | ||| | ||||||||||| Sbjct 59472 CATTCAAAAAGAGTCCACTCTTCACCTTGTTCTCCGTCTGCGAGGTGGTAT 59522 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || || || || ||| | || ||||| | Sbjct 59521 ATGCAGATCTTTGTTAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTTGAACCTTCA 59580 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| ||||| || || || ||||| || || || || ||| Sbjct 59581 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 59640 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||||||||| || ||| | ||||| | || || || Sbjct 59641 CAGCGACTCATCTTTGCTGGAAAACAATTGGAAGATGGGCGAACCCTGTCTGACTACAAC 59700 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||| | || | || | ||| | ||||||||||| Sbjct 59701 ATTCAAAAAGAGTCCACTCTTCACCTTGTACTGCGTCTGCGAGGTGGTAT 59750 >seq4182 Length=188933 Score = 131 bits (144), Expect = 3e-25 Identities = 174/241 (72%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 |||||||| ||||| |||| || || || || ||||| || || | ||| | || || Sbjct 74501 ACAATGCAGATATTCGTAAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGCT 74442 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||| ||| ||| ||||| ||||||||||||||||||||||| ||||| ||| Sbjct 74441 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGAT 74382 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||| | | || ||||| || ||||| | || ||| | || |||||| || || Sbjct 74381 CAGCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTAC 74322 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 |||||||| || || || || || ||| | || || | ||| |||| || ||||||| Sbjct 74321 AATATTCAGAAGGAGTCTACGTTACATCTTGTGTTGAGGTTAAGAGGAGG---TAAAAAT 74265 Query 124776 T 124776 | Sbjct 74264 T 74264 >seq2492 Length=83244 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || ||||||||||| || ||||| | ||| | Sbjct 41912 ATGCAGATTTTTGTAAAGACCCTCACCGGCAAAACTATTACCCTAGAGGTAGAACCTTCA 41853 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| |||| ||||| ||||| ||||| ||||| || || || || Sbjct 41852 GACACTATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGTATCCCGCCAGACCAG 41793 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||| ||||| || || || | || ||| |||| ||| | || || ||| Sbjct 41792 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGTCGCACACTCTCTGACTACAAT 41733 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | |||||||| | | || ||||||| || Sbjct 41732 ATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGGAAT 41683 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || ||||||| |||| |||||||| || || | || |||| || Sbjct 41000 ATGCAGATTTTCGTAAAGACCTTAACTGGCAAAACCATCACACTTGAAGTTGAGCCATCG 40941 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| ||||| ||||| ||||| ||||| || || Sbjct 40940 GACACTATTGAAAATGTTAAGGCCAAAATCCAAGACAAAGAGGGTATCCCACCAGACCAG 40881 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| ||||| || | || ||| |||| ||| | || || ||| Sbjct 40880 CAGAGGCTCATCTTTGCCGGAAAGCAGCTTGAAGATGGTCGCACACTCTCGGACTACAAT 40821 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | |||||||| | | || ||||||| || Sbjct 40820 ATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGGGAT 40771 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || |||||||| || ||| | || |||| || Sbjct 41456 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAAACCATTACTCTTGAAGTTGAGCCATCG 41397 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||||||||| ||||| ||||| ||||| || || Sbjct 41396 GACACTATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAG 41337 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | || ||| |||| ||| | || || ||| Sbjct 41336 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGTACACTCTCTGACTACAAT 41277 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | |||||||| | | || ||||||| || Sbjct 41276 ATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGGGAT 41227 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || |||||||| || ||| | || |||| || Sbjct 41228 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCATCA 41169 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| ||||| ||||| ||||| ||||| || || Sbjct 41168 GACACTATTGAAAATGTTAAGGCCAAAATCCAAGACAAAGAGGGTATCCCACCAGACCAG 41109 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | || ||| |||| ||| | ||| || ||| Sbjct 41108 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGCACACTCTCAGACTACAAT 41049 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | |||||||| | | || ||||||| || Sbjct 41048 ATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGGGAT 40999 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | ||||| |||| |||||||| || || | || |||| || Sbjct 41685 AATGCAGATTTTCGTCAAGACCTTAACTGGCAAAACCATCACACTTGAAGTTGAGCCATC 41626 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| ||||||||||| ||||| ||||| ||||| || || Sbjct 41625 AGACACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCA 41566 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || | || ||| | || ||| | || || || Sbjct 41565 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCGGACTACAA 41506 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || |||||||| || | |||||||| | | || ||||||| || Sbjct 41505 TATCCAGAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGGGAT 41455 Score = 100 bits (110), Expect = 4e-16 Identities = 182/264 (69%), Gaps = 3/264 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| |||| |||||||| || || | || |||| || Sbjct 40316 ATGCAAATTTTCGTCAAGACCTTAACTGGCAAAACCATCACACTTGAAGTTGAGCCATCA 40257 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || ||||| ||||| ||||| ||||| ||||| || || Sbjct 40256 GACACCATAGAAAATGTTAAGGCTAAAATCCAAGACAAAGAGGGTATCCCACCAGACCAG 40197 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | || ||| | || ||| || || || ||| Sbjct 40196 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTATCGGACTACAAT 40137 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAA--AT 124775 || ||||||||||| ||| | ||||| || | | || | ||||| ||||| | | Sbjct 40136 ATCCAAAAAGAATCCACTCTCCATTTAGTACTGAGATTGAGGGGTGGCAATTAATATCAC 40077 Query 124776 TCATAAAAATTGATTGTAAATAAA 124799 ||| ||| ||||| ||||||| Sbjct 40076 ATATAGAAAATGATTCGAAATAAA 40053 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || |||||||| || ||| | || |||| | Sbjct 40772 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCTTCA 40713 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| ||||| ||||| ||||| ||||| || || Sbjct 40712 GACACTATTGAAAATGTTAAGGCCAAAATCCAAGACAAAGAGGGTATCCCACCAGACCAG 40653 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | || ||| | || ||| | || || ||| Sbjct 40652 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCGGACTACAAT 40593 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | |||||||| | | || ||||||| || Sbjct 40592 ATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGGGAT 40543 >seq6007 Length=121097 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 203567 AATTTATAATTTATTTTATTTCTAATGGTTTTTGCAGAATATTCTAATTTATTACTAGCA 203626 |||||| |||||||||| |||||||||||| | ||||| ||||| ||| | ||| Sbjct 36938 AATTTAGAATTTATTTTGTTTCTAATGGTTCTAGCAGAGTATTCCTGTTTTTCTGAGGCA 36997 Query 203627 ATCCAACATGGTACAATATTATGTGAATCAACTTGATAAACATCAATATTTATTT 203681 | ||||||||| ||||||||||| | ||| || ||| | | |||||| |||| Sbjct 36998 ACCCAACATGGGACAATATTATGAGCATCTACCTGAAATA---AAATATTAATTT 37049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755074881891200