Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4146 168 6e-37 seq3626 134 1e-26 seq2492 120 3e-22 >seq4146 Length=100757 Score = 168 bits (186), Expect = 6e-37 Identities = 343/504 (68%), Gaps = 8/504 (2%) Strand=Plus/Minus Query 21569 AAAATCGTGGCGGCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGAC 21628 ||| |||| | || || ||||| || ||||| || |||| ||| | ||||| || || Sbjct 16634 AAAGTCGTCGGAGCTTATTTTGTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGAT 16575 Query 21629 AAGGTGCCGGCGCCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGC 21688 ||||| || || ||||| ||||| | || ||||| || | || || || || || Sbjct 16574 AAGGTACCCATTCCAAATCTTACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGT 16515 Query 21689 GACGGCATCAACGACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCG 21748 ||||| || |||||| ||||| | || ||||| | || |||||| | || Sbjct 16514 GACGGAATTAACGACAGTTTAAAAGAAATCGAAGGAAGTTTCCAAGCTTTGCAAAGATCT 16455 Query 21749 TGT-GCGGGTCGGGCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAA 21807 || ||||| || | || ||||| || |||| || || || ||||| || ||||||| Sbjct 16454 TGCAGCGGG-CGAGAGGACTTCAAAGTTTCTATCCATGACCCTTGGGCAGCTTTACAAAA 16396 Query 21808 GCCCCAAAAGGGCGTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGAT 21867 || || ||||| | || || ||||||||||| ||||||||||||||||| |||||||| Sbjct 16395 ACCACAGAAGGGTTTGTCCTCCTGGAACGAACCTTACAAAGGCAACTTTGGACAACTGAT 16336 Query 21868 GGCAATGAAGAGGGCCAATCCTCACATTAAAGTGTTCGCATCGATCGGCGGATGGACTCT 21927 | | |||| || | ||| | | || || | |||| ||||| || ||||| || Sbjct 16335 GTCTTTGAAACAAGCTAGACCTGATTTGAAGGTTCTTCCATCAATCGGAGGCTGGACACT 16276 Query 21928 GTCCGATCCATTTTATCATATGCACGACGCCGACGTCAGACGGG---TGTTTATCGATTC 21984 | | |||||||| || | | | || | | || | | | | ||| | | || Sbjct 16275 GGCAGATCCATTCTA-CTTTT--TTGATGATAAGGTAAAAAGAGATCGTTTTGTGGCATC 16219 Query 21985 AGTTGAAGAATTTCTGCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAGTT 22044 ||| |||| || || | || ||||| |||| || || || |||| ||||||||||| Sbjct 16218 AGTGAAAGACTTCCTCCAAACTTGGAAATTCTTCGATGGTGTTGACATTGATTGGGAGTT 16159 Query 22045 TCCCGGCGGCAAGGGAGCCAACCC 22068 || || || || || || || || Sbjct 16158 CCCTGGTGGAAAAGGTGCTAATCC 16135 >seq3626 Length=201135 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || ||||| | || |||||||| | ||||| || ||||||||||||||||| Sbjct 59291 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAG 59232 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| ||| || |||||||| || ||| |||| || ||||||||||||||||| Sbjct 59231 AGTGTGCGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGTCGCTGCTGATCGGGAGGG 59172 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || ||||| |||||| ||| || | ||| | || |||| ||| ||| Sbjct 59171 ATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACC 59112 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || || || || || || |||||||| Sbjct 59111 TCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACGAATATCTGCAT 59065 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||||||||||||||| || | || || || || |||||||||||| Sbjct 59489 GTGGACTCTTTTTGAATGTTGTAGTCAGAAAGGGTACGTCCGTCTTCCAGCTGTTTTCCA 59430 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | ||||| || ||||| || ||||| ||||| || |||||| ||||| || Sbjct 59429 GCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCTTT 59370 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| || || | ||| || || | ||| | ||| || || || |||||| Sbjct 59369 ACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGTCTTACCTGTGAGAGTT 59310 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 59309 TTAACAAAAATTTGCAT 59293 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||||||||||||||| || || || ||| ||| || || ||||||||| Sbjct 59945 GTGGACTCTTTTTGAATGTTGTAGTCAGACAGGGTTCGCCCATCTTCCAGTTGTTTTCCA 59886 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| ||||| || || ||||| ||||| |||||||| ||||| ||| Sbjct 59885 GCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTAGCTTTG 59826 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | || || || | || | || || || || ||||| Sbjct 59825 ACATTCTCAATTGTGTCTGAAGGTTCAACTTCCAAAGTAATAGTCTTTCCAGTAAGAGTC 59766 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 59765 TTGACAAAGATCTGCAT 59749 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||||||||||||||| || || || ||| ||| || | ||||||||| Sbjct 59717 GTGGACTCTTTTTGAATGTTGTAGTCAGACAGGGTTCGCCCATCTTCCAATTGTTTTCCA 59658 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| ||||| || || ||||| ||||| |||||||| ||||| ||| Sbjct 59657 GCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTG 59598 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | || || || | || | || || || || ||||| Sbjct 59597 ACATTCTCAATTGTGTCTGAAGGTTCAACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTC 59538 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 59537 TTAACAAAGATCTGCAT 59521 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || |||||||| | || || || ||||||||||| || || | || ||| ||| Sbjct 60188 AATACCAAGTGCAAAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGGGTTCGCCCATCT 60129 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || || || |||||||| |||| || ||||| || || ||||| ||||| |||||||| Sbjct 60128 TCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCC 60069 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||||| ||| || | || | ||||| | || || || | || | || Sbjct 60068 TGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGTTCAACTTCTAATGTAATGGTC 60009 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||| |||||||| Sbjct 60008 TTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 59977 >seq2492 Length=83244 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 ||||||| ||||| |||| ||| || |||||||| || ||||| || | ||||| Sbjct 41695 AATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCAGAGAGTGTGCGA 41754 Query 118581 GTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640 ||| || ||||| || ||||| |||| || | |||||| || || || || ||||| Sbjct 41755 CCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCT 41814 Query 118641 TTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTC 118700 |||||| ||||| || || | ||| | ||||| | || ||||| | ||| Sbjct 41815 TTGTCTTGGATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACCTCTAGGGTA 41874 Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | ||||||||||| || || |||||||||||||||||| Sbjct 41875 ATAGTTTTGCCGGTGAGGGTCTTTACAAAAATCTGCATG 41913 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 ||||||| ||||| |||| ||| || |||||||| || ||||| || | ||||| Sbjct 40783 AATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGA 40842 Query 118581 GTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640 ||| || ||||| ||||| || ||||||| | |||||| || || || || ||||| Sbjct 40843 CCATCTTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCT 40902 Query 118641 TTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTC 118700 |||||| ||||| ||||| | ||| | ||||||| ||| || || | || Sbjct 40903 TTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGTCCGATGGCTCAACTTCAAGTGTG 40962 Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||||||| || | || ||||| ||||||||||| Sbjct 40963 ATGGTTTTGCCAGTTAAGGTCTTTACGAAAATCTGCAT 41000 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 ||||||| ||||| |||| ||| || |||||||| || ||||| || | || || Sbjct 41239 AATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCAGAGAGTGTACGA 41298 Query 118581 GTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640 ||| || ||||| || || || ||||||| | |||||| || || || || ||||| Sbjct 41299 CCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCT 41358 Query 118641 TTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTC 118700 |||||| |||||| ||||| | ||| | ||||||| ||| || || | || Sbjct 41359 TTGTCTTGAATTTTGGCCTTAACATTTTCAATAGTGTCCGATGGCTCAACTTCAAGAGTA 41418 Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||||||| |||| || || |||||||||||||| Sbjct 41419 ATGGTTTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 41456 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 ||||||| ||||| |||| ||| || ||||| || || ||||| || | ||||| Sbjct 41467 AATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAGAGTGTGCGG 41526 Query 118581 GTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640 ||| || ||||| || || || ||||||| | |||||| || || || || ||||| Sbjct 41527 CCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCT 41586 Query 118641 TTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTC 118700 |||||| |||||| |||||| | ||| | |||||| | ||| || || | || Sbjct 41587 TTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAGTGTG 41646 Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||||||| || | || || || ||||||||||| Sbjct 41647 ATGGTTTTGCCAGTTAAGGTCTTGACGAAAATCTGCAT 41684 Score = 107 bits (118), Expect = 2e-18 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 ||||||| ||||| |||| ||| || |||||||| || ||||| || | | |||| || Sbjct 41011 AATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTC--TGAGAGTGTGC 41068 Query 118581 GT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCT 118638 | ||| || ||||| || || || ||||||| | |||||| || || || || |||| Sbjct 41069 GACCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCT 41128 Query 118639 CCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGG 118698 | |||||| ||||| ||||| | ||| | ||||| | ||| || || | | Sbjct 41129 CTTTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGTCTGATGGCTCAACTTCAAGAG 41188 Query 118699 TCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | | |||||||| |||| || || || ||||||||||| Sbjct 41189 TGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 41228 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 ||||||| ||||| |||| ||| || ||||| || || ||||| || | ||||| Sbjct 40327 AATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAGAGTGTGCGA 40386 Query 118581 GTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640 ||| || ||||| || || || ||||||| | |||||| || || || || ||||| Sbjct 40387 CCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCT 40446 Query 118641 TTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTC 118700 |||||| ||||| ||||| | ||| | ||||| | ||| || || | || Sbjct 40447 TTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGTCTGATGGCTCAACTTCAAGAGTG 40506 Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||||||| |||| || ||||| ||||||||||| Sbjct 40507 ATGGTTTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 40544 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 ||||||| ||||| |||| ||| || |||||||| || ||||| || | ||||| Sbjct 40555 AATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGG 40614 Query 118581 GTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640 ||| || ||||| || || || ||||||| | |||||| || || || || ||||| Sbjct 40615 CCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCT 40674 Query 118641 TTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTC 118700 |||||| ||||| ||||| | ||| | ||||| | ||| || || | || Sbjct 40675 TTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGTCTGAAGGCTCAACTTCAAGAGTG 40734 Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||||||| |||| || || || ||||||||||| Sbjct 40735 ATGGTTTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 40772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433617009536428