Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10]
40,359 sequences; 808,524,533 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq1404 140 5e-28
seq4182 95.1 2e-14
seq3626 89.7 8e-13
>seq1404
Length=248339
Score = 140 bits (154), Expect = 5e-28
Identities = 148/195 (76%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558
|||||| || || || |||||||||||||||||||| ||||| ||||||| ||||| ||
Sbjct 175809 AGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGAGTTGTATTATTCAATCACTC 175868
Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618
|||| || ||| || |||| | ||| |||||||| ||||| ||||||||||||||||
Sbjct 175869 AGATGATGACTTTGTAGTAAAAAAAGGTGATAGAATTGCTCAACTAATATGTGAAAAAAT 175928
Query 10619 TTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCAGAAACAAAAAGATCTGATTTTGG 10678
|| || || | || | |||| | | | | ||||| || |||||| | ||| ||
Sbjct 175929 TTACTACCCCGAGCTGATGGAAGTAGCCAATCTTTCAGATACTAAAAGAGCAGATGGAGG 175988
Query 10679 TTTTGGATCTACTGG 10693
||||| || |||||
Sbjct 175989 GTTTGGTTCAACTGG 176003
>seq4182
Length=188933
Score = 95.1 bits (104), Expect = 2e-14
Identities = 153/228 (67%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| ||||| | || || || | |||||| ||||| || || ||||| || || ||
Sbjct 74272 CCTCCTCTTAACCTCAACACAAGATGTAACGTAGACTCCTTCTGAATATTGTAGTCGGAT 74331
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| || | || ||| || | ||||| |||||||| ||||| | |||||||||||| |||
Sbjct 74332 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGA 74391
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| |||||||||||||| |||||| ||| || ||
Sbjct 74392 ATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCCTCCACC 74451
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278
|| || ||||| ||||| || || | ||||| | |||||| ||||||
Sbjct 74452 TCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTTACGAATATCTGCATT 74499
>seq3626
Length=201135
Score = 89.7 bits (98), Expect = 8e-13
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||||| || | ||||||||| || ||||| ||||| ||| || || ||||| || ||
Sbjct 60203 CCACCTCGGAGACGTAATACCAAGTGCAAAGTGGATTCCTTTTGA-ATGTTATAGTCAGA 60145
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||| |||| | ||| || | ||| ||||||||||| || | || || || || |||||
Sbjct 60144 AAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGG 60085
Query 146170 AATTCCTTCTTTATCTTG 146187
|| ||||| || || ||
Sbjct 60084 GATGCCTTCCTTGTCCTG 60067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743151300225280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |