Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1404 140 5e-28 seq4182 95.1 2e-14 seq3626 89.7 8e-13 >seq1404 Length=248339 Score = 140 bits (154), Expect = 5e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 |||||| || || || |||||||||||||||||||| ||||| ||||||| ||||| || Sbjct 175809 AGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGAGTTGTATTATTCAATCACTC 175868 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 |||| || ||| || |||| | ||| |||||||| ||||| |||||||||||||||| Sbjct 175869 AGATGATGACTTTGTAGTAAAAAAAGGTGATAGAATTGCTCAACTAATATGTGAAAAAAT 175928 Query 10619 TTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCAGAAACAAAAAGATCTGATTTTGG 10678 || || || | || | |||| | | | | ||||| || |||||| | ||| || Sbjct 175929 TTACTACCCCGAGCTGATGGAAGTAGCCAATCTTTCAGATACTAAAAGAGCAGATGGAGG 175988 Query 10679 TTTTGGATCTACTGG 10693 ||||| || ||||| Sbjct 175989 GTTTGGTTCAACTGG 176003 >seq4182 Length=188933 Score = 95.1 bits (104), Expect = 2e-14 Identities = 153/228 (67%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || || || | |||||| ||||| || || ||||| || || || Sbjct 74272 CCTCCTCTTAACCTCAACACAAGATGTAACGTAGACTCCTTCTGAATATTGTAGTCGGAT 74331 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| || | ||||| |||||||| ||||| | |||||||||||| ||| Sbjct 74332 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGA 74391 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| |||||| ||| || || Sbjct 74392 ATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCCTCCACC 74451 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || ||||| ||||| || || | ||||| | |||||| |||||| Sbjct 74452 TCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTTACGAATATCTGCATT 74499 >seq3626 Length=201135 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||||| || | ||||||||| || ||||| ||||| ||| || || ||||| || || Sbjct 60203 CCACCTCGGAGACGTAATACCAAGTGCAAAGTGGATTCCTTTTGA-ATGTTATAGTCAGA 60145 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| |||| | ||| || | ||| ||||||||||| || | || || || || ||||| Sbjct 60144 AAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGG 60085 Query 146170 AATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 60084 GATGCCTTCCTTGTCCTG 60067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743151300225280