Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq688 172 4e-38 seq4146 136 3e-27 seq3626 100 2e-16 seq2492 95.1 1e-14 >seq688 Length=109112 Score = 172 bits (190), Expect = 4e-38 Identities = 400/603 (66%), Gaps = 34/603 (6%) Strand=Plus/Minus Query 12871 CTGACTTGCGATTGGAAGAAGTGCGTTTGAACACCTTTGAGAAGTGGCCTGTGTCGTTTT 12930 ||||| |||| ||||||| ||| | || || || || ||||||||||| || ||| Sbjct 9960 CTGACATGCGCCGTGAAGAAGAGCGACTCAAAACTTTCGATAAGTGGCCTGTTTCATTTA 9901 Query 12931 TGTCGCCGGAAACCATGGCTAAAAATGGGTTTTACTACTTGGGTAGGAGCGACGAGGTGC 12990 | | || ||| | | |||||||| || || ||||| | || || |||| || |||| Sbjct 9900 TCACTCCTGAACGCTTAGCTAAAAACGGATTCTACTATCTAGGCCGGGGCGATGAAGTGC 9841 Query 12991 GTTGTGCGTTTTGTAAAGTGGAGATAATGCGTTGGAAGGAGGGCGAAGATCCCGCTGCCG 13050 | ||||| || || ||||| || || ||| | ||| ||| || || ||||| |||| | Sbjct 9840 GCTGTGCTTTCTGCAAAGTCGAAATCATGAGATGGGTGGAAGGGGACGATCCTGCTGTAG 9781 Query 13051 ACCATAAGAAGTGGGCTCCCCAATGTCCGTTTGTGAAGGGTATCGACGTG------TGCG 13104 | ||| | | |||||| ||||||||||| || | | | ||| | || ||| Sbjct 9780 ATCATCAAAGGTGGGCACCCCAATGTCCATTCCTAA--GACATCAAGCTGGCAATGTGCC 9723 Query 13105 GTTCGATTGT--TACAACCAAT----------AATATCCAA-AATA----CTACAACCCA 13147 | | |||| |||| | | ||| | || || | | ||||| || Sbjct 9722 GATGGATTCGCCTACATCTGACGGCCGTGACGAATGTGGAACAAGAGCGCCGACAACTCA 9663 Query 13148 CGACACTATTATCGGT---------CCCGCTCACCCCAAATACGCCCATGAAGCTGCTCG 13198 | | |||| | |||||||||||| ||| || |||||||| || Sbjct 9662 AGCTGCGCCTATCCATATTCCACGACCCGCTCACCCCCGATATGCATCCGAAGCTGCCCG 9603 Query 13199 AGTCAAGAGTTTTCACAACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGA 13258 || | ||| | | ||||| || ||||| || | || ||| || | || || Sbjct 9602 TCTCCGTACATTTGTCGATTGGCCTCGCAGTATGCGACAAAAGCCTGAGGAGCTAGCCGA 9543 Query 13259 TGCCGGTTTCTTCTACACTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGG 13318 || ||||||||||||||||| | || ||||| || || ||||| | |||||||| || Sbjct 9542 AGCTGGTTTCTTCTACACTGGTCAAGGAGACAAAACGAAATGCTTTTTCTGTGACGGTGG 9483 Query 13319 ATTGAAAGATTGGGAGCCGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCG 13378 ||||| || ||||| || ||| | || ||||| || |||| | | |||||||| || Sbjct 9482 TTTGAAGGACTGGGAAAATGACGATATTCCCTGGGAGCAACATGCACGTTGGTTCGATCG 9423 Query 13379 TTGCGCCTACGTTCAGCTAGTCAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGC 13438 || |||||||| || || ||||| || |||| || ||||| || || || ||||||| Sbjct 9422 ATGTGCCTACGTCCAACTTGTCAAAGGACGAGAGTATGTACAAAAGGTTATATCGGAAGC 9363 Query 13439 CTG 13441 || Sbjct 9362 GTG 9360 >seq4146 Length=100757 Score = 136 bits (150), Expect = 3e-27 Identities = 621/974 (64%), Gaps = 17/974 (2%) Strand=Plus/Plus Query 6369 CAATCTCCCTGTAGTCCACCACACCCTCCTCCCAAGTGCCTTTCACTTTACCCGTCGCCA 6428 ||||||| |||||||| |||||||| |||| ||| || ||||| ||| || || | Sbjct 15659 CAATCTCTCTGTAGTCGACCACACCATCCTGCCAGGTCCCTTTACAAGGACCTGTGGCTA 15718 Query 6429 CCCCACTAAACAGATTGTTGTTCGTGTAATTCGTCACACCCGACCACCCCCTGCCGTACA 6488 | ||| | || |||| || | ||||| || || || | ||| || | || |||| Sbjct 15719 CTCCAGTGAAAGGATTATTATCTGTGTAGTTTTGGACTCCAGTCCAACCACGACCATACA 15778 Query 6489 TAGCCACCCCCACCACCAACTTGCCACTGTTCACACTCTGGTTCAACAAACGCCTCAACG 6548 | || || || || | | ||| | ||| || | ||| || | | | Sbjct 15779 TCGCTACACCAACTATAATCTTCTTAGGGTTGACTCCTTGGGCTAAGAGGTTTTTAACTC 15838 Query 6549 CAAAGTCTGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACAGAGGTGCGTGGT 6608 ||||||| || |||||| |||| | | ||||| | |||| |||| |||| || | Sbjct 15839 CAAAGTCAGTTGTGTAGGTTTCCTTTGGATTCCATGCAGGTGCGTACAACGGTGTTTGAT 15898 Query 6609 AGCCCAGATCCGTCATC-GACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGTAG 6667 || ||| ||||| |||||||| || || | ||||| |||| | ||| || | Sbjct 15899 GTCCAAGAGT-GTCATTTGACCACGCTCCTTTAAAGTCGTAACTCATTAAGAAGATATGA 15957 Query 6668 TCGAGATACTGTTGGCACTGTTTGTAGTCGACCACGTCTATCTTGTCGTAACCACCGCTG 6727 || | ||| || || | ||||||| || || | || || || ||||| | || Sbjct 15958 TCCATATATTGCTGAGCTTTCCTGTAGTCAACTACTTGGATTTTATCCCAACCAGCACTA 16017 Query 6728 ATGGCGCTCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTCCAGCTCGTCCAACATTTGT 6787 || ||| |||| | || || || |||| | | ||||| || ||||| Sbjct 16018 ATAGCGGATGTCAGTTCATATTTCTTACCAGTCTCTGCGGATAACTCGTTCAGCATTTCA 16077 Query 6788 CTCAAATCGCTCAGCAGCTGTACATAGGTGTACTTGTCGGTG-TCAGCATCGCCCAACTT 6846 | || || ||| ||||| || || |||| | || | | | || | || Sbjct 16078 CGTAACTCTTTCATAAGCTGGACGTAA----ACTTCACCGTCATTTGGTCCACCGAGGTT 16133 Query 6847 GTCGTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTT 6906 || || || ||||| || || |||||||| ||||| || || || ||||| || || Sbjct 16134 AGGATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAGAATTT 16193 Query 6907 CCACGTCTCCAGAAACTCGCGCACGCTCTGCACAAACACCCGA---CGCTTGGCGGAGTC 6963 ||| || | || || || ||| |||||| ||| | || | || Sbjct 16194 CCAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAAA---CGATCTCTTTTTACCTTATC 16250 Query 6964 GTGCATCTTGTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAG 7023 | | |||||| || || || ||||| || || || || || || | ||| Sbjct 16251 ATCAAAAAAGTAGAATGGATCTGCCAGTGTCCAGCCTCCGATTGATGGAAGAACCTTCAA 16310 Query 7024 ATTGGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTC 7083 || || | ||||| | | |||||| || ||||| || || || || || |||| Sbjct 16311 ATCAGGTCTAGCTTGTTTCAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTT 16370 Query 7084 GTACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCAC 7143 | | || |||||| |||||||| |||| || |||| || || ||| || Sbjct 16371 CCAGGAGGACAAACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCATGGATAGAAAC 16430 Query 7144 TTTGAAATCGTCTCGGCCCGC-GCACGATCTTTGCAACGCTTC-AAACGACCCCGGCACC 7201 |||||| || ||||| ||||| ||| ||||||||||| |||| |||| || | | Sbjct 16431 TTTGAAGTCCTCTCG-CCCGCTGCAAGATCTTTGCAAAGCTTGGAAACTTCCTTCG-ATT 16488 Query 7202 TGTTTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAA 7261 | ||| || |||||| | |||||| || || || ||||| | ||||||||| || | | Sbjct 16489 TCTTTTAAACTGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTAAAGAAGA 16548 Query 7262 TGGCTGAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCAC 7321 || | ||||| || | ||| ||||| ||| | || || | | ||| ||||||||| Sbjct 16549 TGTGTAAGATTTGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACACCCCAC 16608 Query 7322 TCCACAAAGTACGC 7335 |||||||| || || Sbjct 16609 TCCACAAAATAAGC 16622 >seq3626 Length=201135 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || | |||||||||||| ||||| ||||| ||||||||||| || Sbjct 59291 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAG 59232 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || || ||||| || ||||| || | ||||| || |||||||| Sbjct 59231 AGTGTGCGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGTCGCTGCTGATCGGGAGGG 59172 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || |||||| |||||| || || | | | ||| ||| ||| Sbjct 59171 ATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACC 59112 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCC 45342 |||| ||| || || || || || || |||||||| || || ||||| || || Sbjct 59111 TCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACGAATATCTGCATTTTTCC 59059 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| | | |||||||||||||| ||| ||||| |||||||| ||||| Sbjct 60204 GCCACCTCGGAGACGTAATACCAAGTGCAAAGTGGATTCCTTTTGAATGTTATAGTCAGA 60145 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || |||||||| ||||| || || || | ||||||||||| ||||| Sbjct 60144 AAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGG 60085 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| ||||| || || | | | |||| | || || Sbjct 60084 GATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGTTCAAC 60025 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| ||||| || || |||||||| |||||||| ||||| Sbjct 60024 TTCTAATGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 59977 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || | | ||| | ||| || ||| ||| || |||||||||||||| | Sbjct 59747 CCACCTCGCAGACGCAGTACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAC 59688 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || |||| ||||||||| || || || | ||||||||||| ||||| Sbjct 59687 AGGGTTCGCCCATCTTCCAATTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 59628 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| ||||| || || | | | |||| | || || Sbjct 59627 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGTTCAACT 59568 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| ||||| || || |||||||| |||||||| ||||| Sbjct 59567 TCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 59521 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || | | || | ||| || ||| ||| || |||||||||||||| | Sbjct 59975 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAC 59916 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || |||||||||||||| || || || | ||||||||||| ||||| Sbjct 59915 AGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 59856 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| ||||| || || | | | |||| | || || Sbjct 59855 ATGCCTTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTGTCTGAAGGTTCAACT 59796 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| ||||| || || |||||||| |||||||| ||||| Sbjct 59795 TCCAAAGTAATAGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 59749 >seq2492 Length=83244 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| | |||||| || || ||| || || || || |||||||| Sbjct 41230 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCAGAG 41289 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || || || || ||||| || || | || ||| ||||| || || Sbjct 41290 AGTGTACGACCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 41349 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||| ||||| |||||| |||||| | | ||||| ||| || Sbjct 41350 ATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATAGTGTCCGATGGCTCAACT 41409 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| || ||||| |||| ||||| ||||| || ||||| Sbjct 41410 TCAAGAGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 41456 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| | |||||| || || ||| || ||||| || |||||||| Sbjct 40318 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAG 40377 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| |||| | || || || || || ||||| || || | || ||| ||||| || || Sbjct 40378 AGTGTGCGACCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 40437 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAAC 45261 | |||||| ||||| ||||| |||||| Sbjct 40438 ATACCCTCTTTGTCTTGGATTTTGGCCTTAAC 40469 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| | |||||| || || ||| || || || || |||||||| Sbjct 40774 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAG 40833 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| |||| | || || || || |||||||| || || | || ||| ||||| || || Sbjct 40834 AGTGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 40893 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAAC 45261 | |||||| ||||| ||||| |||||| Sbjct 40894 ATACCCTCTTTGTCTTGGATTTTGGCCTTAAC 40925 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| | |||||| || || ||| || ||||| || |||||||| Sbjct 41458 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAG 41517 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || || || || ||||| || || | || ||| ||||| || || Sbjct 41518 AGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 41577 Query 45230 ACACCCTCCTTGTCCGCAATTTT 45252 | |||||| ||||| |||||| Sbjct 41578 ATACCCTCTTTGTCTTGAATTTT 41600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394880872262539