Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq4146 275 5e-69 seq4182 93.3 4e-14 >seq4146 Length=100757 Score = 275 bits (304), Expect = 5e-69 Identities = 663/986 (67%), Gaps = 33/986 (3%) Strand=Plus/Plus Query 35873 TTAGCAATCTGTCTGTAGTCGACCACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACG 35932 || ||||||| ||||||||||||||| || | | ||| || || | || || | Sbjct 15655 TTTGCAATCTCTCTGTAGTCGACCACACCATCCTGCCAGGTCCCTTTACAAGGACCTGTG 15714 Query 35933 GCTACGCCACTGAATGGATTGTCA-CTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCC 35991 ||||| ||| |||| ||||| | | |||| |||||| ||||| || |||||||| || || Sbjct 15715 GCTACTCCAGTGAAAGGATTATTATCTGT-GTAGTTTTGGACTCCAGTCCAACCACGACC 15773 Query 35992 GTACATTGCTACGCCCAACACGAGtttttttGGATTCACTCGTTGCGCGAGCAAAGCGTC 36051 ||||| ||||| || | | | || || || || |||| ||| || | | | Sbjct 15774 ATACATCGCTACACCAACTATAATCTTCTTAGGGTTGACTCCTTGGGCTAAGAGGTTTTT 15833 Query 36052 CACGGCCACGTTGGCGGTGTACGGTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGT 36111 || | | || | ||||| | ||| || || ||||| || | |||||| | || Sbjct 15834 AACTCCAAAGTCAGTTGTGTAGGTTTCCTTTGGATTCCATGCAGGTGCGTACAACGGTGT 15893 Query 36112 CTGATGACCGAGATCGGTATTAGACCAAGCTCCTTTGAAATCATAACTCATCACGAAAAT 36171 ||||| || ||| | ||| ||||| |||||||| || || |||||||| | ||| || Sbjct 15894 TTGATGTCCAAGAGTGTCATTTGACCACGCTCCTTTAAAGTCGTAACTCATTAAGAAGAT 15953 Query 36172 TTTATCTAAATACTGTTGTGCTCGGTCGTAATTAACCGCGGCGATCTTGTCTATGCCAGC 36231 | ||| | ||| || || ||| ||| | ||| | ||| || || ||||| Sbjct 15954 ATGATCCATATATTGCTGAGCTTTCCTGTAGTCAACTACTTGGATTTTATCCCAACCAGC 16013 Query 36232 GCTAATCGCTGTGGTGAGTTCTAAAGT---ACGATTCGTTTGTATTTGAACTTGATCGAG 36288 ||||| || | || ||||| | | || | || | || | |||| | || || Sbjct 16014 ACTAATAGCGGATGTCAGTTCATATTTCTTACCAGTC-TCTGCGGAT-AACTCGTTC-AG 16070 Query 36289 CATGGCGCGCAATTCGCCCAATAAAGC--GA--TATACGT----GTTATTGTCGCGTTCC 36340 ||| | || || || || |||| || || || | || ||| | ||| Sbjct 16071 CATTTCACGTAACTCTTTCAT--AAGCTGGACGTAAACTTCACCGTCATTT----GGTCC 16124 Query 36341 ACATCGCCAACGTTTGGATTGGCGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATG 36400 || | | ||| ||||| || ||||| || || || || ||||||||||| || | Sbjct 16125 AC-----CGAGGTTAGGATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACA 16179 Query 36401 CCGTCGAAAAATTTCCATGTCAACACAAATTCACGCACGGATTCGACAAAAATTTGTCGC 36460 || ||||| |||||||| || | || || ||| ||| | |||||| | || Sbjct 16180 CCATCGAAGAATTTCCAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAAACGATCTCTT 16239 Query 36461 GTTCGCGCATCGTGCATATGATAGAAGGGATCGGACAGTGTCCAACCGCCGATTGATGCC 36520 || | ||| | | | ||||| ||||| | ||||||||| || |||||||||| Sbjct 16240 TTTACCTTATCATCAAAAAAGTAGAATGGATCTGCCAGTGTCCAGCCTCCGATTGATGGA 16299 Query 36521 AACACTTTTAGATTGGGATTGGCCAATTTTGCTGCCATTAATTGACCAAAATTGCCTTTG 36580 | || || | || || | || ||| | ||| | ||| ||||| ||||||||| Sbjct 16300 AGAACCTTCAAATCAGGTCTAGCTTGTTTCAAAGACATCAGTTGTCCAAAGTTGCCTTTG 16359 Query 36581 TAGGGTTCGTTCCATGCG--CTAACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGGAT 36638 || ||||||||||| | | | ||| ||| | ||||||||||| | || ||||| || | Sbjct 16360 TAAGGTTCGTTCCAGGAGGACAAAC-CCT-TCTGTGGTTTTTGTAAAGCTGCCCAAGGGT 16417 Query 36639 CGTGTATGGAAACTTTAAAATTGTCCCTGCCAGC-GCACGATCTTTGCAACGCTTCAAAA 36697 | || || |||||||| || | || | ||| || ||| ||||||||||| |||| ||| Sbjct 16418 CATGGATAGAAACTTTGAAGTCCTCTC-GCCCGCTGCAAGATCTTTGCAAAGCTTGGAAA 16476 Query 36698 CTCCCCGTGATAGATTTTAAACTGTCGTTTATACCGTCACCGCCGCAAATCGGTATAAAT 36757 || || ||| ||||||||||||||| || ||||||||||| || || || |||||| Sbjct 16477 CTTCCTTCGATTTCTTTTAAACTGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAAT 16536 Query 36758 CCGTATAAAATGTGCGAAAGGTTCGGCGTGGGCACTTTGTCCACGGGAAAAGATCGACCG 36817 ||||| | || || | ||| || || |||| || || || || || || || | | Sbjct 16537 CCGTAAAGAAGATGTGTAAGATTTGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGG 16596 Query 36818 TAAACGCCCCATTCGACAAAATAGGC 36843 ||||| ||||| || |||||||| || Sbjct 16597 TAAACACCCCACTCCACAAAATAAGC 16622 >seq4182 Length=188933 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||||||||| || |||||| | || || ||||| || ||| |||| || || | | Sbjct 74498 ATGCAGATATTCGTAAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGCTTCC 74439 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| ||| || | |||||| | |||||||| | || || ||| Sbjct 74438 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAG 74379 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| || ||||| ||||||||| | || | ||| |||| Sbjct 74378 CAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTACAAT 74319 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAA 25062 || ||||| ||| | ||| | ||| | ||||| | || | |||||| || Sbjct 74318 ATTCAGAAGGAGTCTACGTTACATCTTGTGTTGAGGTTAAGAGGAGGTAAA 74268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418098246589280