Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4459 598 5e-166 seq409 102 1e-16 >seq4459 Length=154925 Score = 598 bits (662), Expect = 5e-166 Identities = 1208/1781 (68%), Gaps = 20/1781 (1%) Strand=Plus/Minus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 || || | ||| ||||| || | | | ||| ||||| ||||||| ||| ||||| || Sbjct 144009 TTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTTGTACGTAAATAATACATGCCT 143950 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||||| ||| | |||| | |||||||| || ||| ||||| |||| | || Sbjct 143949 GTTTTTAAACCCATTTTCCAAGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGT 143890 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || |||| ||| ||||| | ||| |||||||| || || || || || || || |||||| Sbjct 143889 TCAGCTACATGAATATTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCC 143830 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62275 || | || | || || | ||||||||| | || ||||| || || || | |||| Sbjct 143829 ATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCTGA-TATC 143771 Query 62276 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGAT 62332 || |||| |||| ||||||||| || ||| || | ||| ||| || || Sbjct 143770 TTTGGGAATAGTTTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGATTTTTCAT 143711 Query 62333 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTG 62392 ||||| | |||||| | | | || ||| |||| | ||||| | ||||| ||||| Sbjct 143710 GTCATCGTCCCATAAATCTGCTTGAGTCAAATCTCTTAAAAGATGATGATTAACGACTTG 143651 Query 62393 GAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62452 ||||| || || ||||||| | ||| ||||| || | ||||| | || || Sbjct 143650 AAATTCGCCTGATAATACTCGTCTTTGGTATATATTTGAAGTGAATGGTTCAAAGGATTC 143591 Query 62453 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62512 |||||| || | || ||||| || ||||| || |||||||| |||| | | | ||| Sbjct 143590 ATTATTGCCAAGTATCTGAGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAATT 143531 Query 62513 TCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGAC 62570 | || || ||||| | ||||| ||||| ||| |||||| ||| ||||| | Sbjct 143530 ACGAATTCC--ATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTG 143473 Query 62571 GGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62629 || | | |||| | ||| || | || | | || | ||| |||| Sbjct 143472 GGAGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTA-CCTTCATA 143414 Query 62630 TGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATA 62689 || | ||| ||| || ||||| |||| || ||| || || || || || |||||||| Sbjct 143413 TGAACTATAAACTCCCTCTTTCTCTGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATA 143354 Query 62690 AATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATT 62749 || || ||||| |||| | |||| ||||| || ||| | || || Sbjct 143353 GATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCG 143294 Query 62750 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62809 | || | ||| || || ||||| ||||| || |||||||| || |||||||||| | | Sbjct 143293 CATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCAT 143234 Query 62810 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62869 ||| ||| ||| ||||||||||| ||||||||||| | ||||||||||||||| || || Sbjct 143233 ATTGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTAAGGTT 143174 Query 62870 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC---CATCTAT 62926 | || | ||| || || || | || ||||| || | |||| | Sbjct 143173 TTGTGTTATGATTTTTGTAACTTCTTTTAACTTTCCAAAATTGTATGTTCTATCATCATT 143114 Query 62927 TACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGC 62986 ||||||||| ||||| |||| ||| || | |||||| || ||||| |||| | | Sbjct 143113 TACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGATGT 143054 Query 62987 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 ||||| || ||| || || || ||||||||||| || || ||||||| ||||| ||||| Sbjct 143053 ATATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATT 142994 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 ||||||| ||||||| | ||| || || | ||||||||||| || ||||||| || | Sbjct 142993 ACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGC 142934 Query 63107 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT 63166 ||||| ||| || ||||| | ||| | ||| ||| | | || | || ||| || Sbjct 142933 TTCTACAATAGCCTTCCATAAAACTTGTGCCCTTACTT--GTTTGACAAATCTTTTTTCA 142876 Query 63167 TTCGTATAGAGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGA 63224 ||| ||| | ||||| ||| ||||| ||||||||| || |||| | |||| Sbjct 142875 TTCTCATACTTTTCATACAGAGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAGGA 142816 Query 63225 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63284 || |||| ||||||||||| ||| | | | | | | |||| ||||||||| | | Sbjct 142815 CAGTCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAA 142756 Query 63285 TCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTC 63344 || || ||||| | ||| ||| | || || | || | ||| || || || |||||| Sbjct 142755 TCTGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTGCCAGTATTC 142696 Query 63345 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63404 ||||| ||||| | ||| | | | ||| |||||||| ||||| || |||| || | Sbjct 142695 TTTTTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAAT 142636 Query 63405 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63464 | || || || ||||| || || ||||||| ||||| || ||| | ||||| ||||| Sbjct 142635 GCCCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTT 142576 Query 63465 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCA 63524 |||||||| | || || ||||||| |||||| || || | ||| | || | || Sbjct 142575 AACATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAGCT 142516 Query 63525 CGAATATTACTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63583 | ||| || ||| || || || || ||||| |||||| || || || ||| | Sbjct 142515 CTGATACAGTGAACATGA-AGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTG 142457 Query 63584 TTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 ||| | |||||||| || || || || || ||||| ||||| | || ||||| Sbjct 142456 TTTCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGA 142397 Query 63644 AGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 |||| ||| | | | ||| | ||| |||||| |||||| ||||| || || | Sbjct 142396 TGACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAAATA 142337 Query 63704 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63763 || ||||| | || || || || | ||||||||| || || || | ||| ||||| Sbjct 142336 CTTCTCAGACAATAAGTTATAGGTGTTAATAGCTGAATCAATGTCTTCTCCATGTATTCC 142277 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAA 63804 | || |||||||||| ||| || || ||||| ||| ||| Sbjct 142276 AATAGCTACACGCATTAGCATATGTTGTGGTCTCTCAGCAA 142236 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/161 (72%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 64010 AAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGC 64069 |||| ||||||| ||||||||||||| ||| || ||||||||||| || || || | || Sbjct 137567 AAAT-GTTTTTTGGTTTCCTTGTGTAAATTAGAAATGGCTATTCTAGCTGCAAGTACAGC 137509 Query 64070 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 64129 ||| || ||||| | |||| ||||| ||| | || || |||| | || | || Sbjct 137508 ATAGTCAGGATGGTCAATAGTCATTGTGGCAGCTGTCTCAGCAGCCAAGTTATCAAGCTC 137449 Query 64130 TACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCA 64170 || ||||| ||||| ||| | ||| |||||| |||| Sbjct 137448 AACAGTTGTCACTCCTGAATACAGACCTCCAATAACTTTCA 137408 >seq409 Length=488447 Score = 102 bits (112), Expect = 1e-16 Identities = 133/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || |||||||| || | |||||| || ||||| || || || || || Sbjct 75215 CCAGGCATGAGTCCACGCTTCTTTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAA 75274 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATGTA 33759 || || ||||| || ||||| || |||| | |||||| | ||| | | | || | Sbjct 75275 ATACCCTCTACAGCTGCAAATGCTATAATACGTTCTCCAAACGTGGCAGTTTTGCTTGCA 75334 Query 33760 -TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||| | | | ||||| || ||||||||||| |||||||||| |||||||| |||||| Sbjct 75335 ATCCATTGTAGTGCCCAGTCCGCCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTA 75394 Query 33819 AA 33820 || Sbjct 75395 AA 75396 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 ||| || || |||| |||| |||||||||||| || |||||||| || || || || ||| Sbjct 76494 TCAATGTTACCTTT-GATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTT 76552 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTA 34166 || ||||| | ||| || || |||| ||||| ||||| |||||||||||| Sbjct 76553 TTGTACATTTCCCAAATATCTGGATACTGGATAGGGAATATAACAAATCTA 76603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629499864893520