Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4459 607 8e-169 seq409 114 1e-20 >seq4459 Length=154925 Score = 607 bits (672), Expect = 8e-169 Identities = 1209/1776 (68%), Gaps = 26/1776 (1%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| |||| || | ||||| ||| | |||||| | | ||||||||| || ||| Sbjct 144006 TCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTTGTACGTAAATAATACATGCCTGTT 143947 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| |||| | |||| | |||||||| || |||||||| | || | || | | Sbjct 143946 TTTAAACCCATTTTCCAAGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGTTCA 143887 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| || || | | || |||||||| |||||||| |||||||| || || ||||| Sbjct 143886 GCTACATGAATATTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCCATC 143827 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | || ||| ||| || ||||| || || ||||| | | | | |||| | Sbjct 143826 TGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCTGATATCTTTG 143767 Query 37030 GGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 || | | || | || |||| |||||||||| | ||| ||| || |||||| Sbjct 143766 GGAATAGTTTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGATTTTTCATGTCA 143707 Query 37087 TTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 | | ||| | || || ||| | | ||||| || || || |||| || || |||| Sbjct 143706 TCGTCCCATAAAT--CTGCTTGAGTCAAATCTCTTAAAAGATGATGATTAACGACTTGAA 143649 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | || || |||||||||| |||| |||||||| ||| ||||||||| ||| |||| Sbjct 143648 ATTCGCCTGATAATACTCGTCTTTGGTATATATTTGAAGTGAATGGTTCAAAGGATTCAT 143589 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 |||| | | ||| |||| |||||||| || ||||| || || | ||| || ||| | Sbjct 143588 TATTGCCAAGTATCTGAGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAATTAC 143529 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 | ||||||| || ||| | | ||| || || ||||||||| | ||| || || Sbjct 143528 GAATTCCATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTGGGAG 143469 Query 37325 TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 |||| |||||||||| |||| | ||| |||| || | ||| | | | ||||| Sbjct 143468 TCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTACCTTCATATGAAC 143409 Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTG 37444 |||| ||| | | | |||| ||| || |||| ||| | || | ||||| || | Sbjct 143408 TATAAACTCCCTCTTTCTCTGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATAGATAG 143349 Query 37445 TTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATA 37504 | || || || ||| ||||| | ||||| ||| || || | | |||| || | Sbjct 143348 TCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCGCATCA 143289 Query 37505 ATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAG 37564 | ||| ||||||| ||||| || || || |||||||| ||||||||| | |||| | Sbjct 143288 GCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCATATTGG 143229 Query 37565 ATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAA 37624 | | | |||| |||||||||||||||| |||||| |||||||| || |||| Sbjct 143228 AGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTAAGGTTTTGTG 143169 Query 37625 CTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTT-----ATTATTAAC 37679 || ||||| |||| | | | ||||| || || || || ||| || ||| || Sbjct 143168 TTATGATTTTTGTAACTTCTTTTAACTT-TCCAAAAT-TGTATGTTCTATCATCATTTAC 143111 Query 37680 AAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAA 37739 ||| || |||| | |||||| ||| ||||||||| || ||||||||| | || | Sbjct 143110 AAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGATGTATA 143051 Query 37740 TTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGA 37799 || || || |||||||| |||||||| || |||||||||| | ||| | ||||| Sbjct 143050 TTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATTACT 142991 Query 37800 TTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTC 37859 ||| | ||||| |||||||| |||| || | || || ||| ||| | ||| || || Sbjct 142990 CTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGCTTC 142931 Query 37860 GATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTT---TAAt-ttttttCTTTG 37915 | ||||| ||||||||| | ||| | || | | || ||| ||||||| | Sbjct 142930 TACAATAGCCTTCCATAAAACTTGTGCCCTTAC--TTGTTTGACAAATCTTTTTTCAT-- 142875 Query 37916 TTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGAC 37975 | || || | | ||| | | ||| || | ||||| ||| || || |||| Sbjct 142874 TCTCATACTTTTCATACAGAGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAGGAC 142815 Query 37976 ATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAAT 38035 | || |||||||| | | ||| | ||||| |||||| || | || |||||| |||| Sbjct 142814 AGTCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAAT 142755 Query 38036 CAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCT 38095 | |||| |||||| ||| ||| || || | | || | |||||| || || ||||| Sbjct 142754 CTGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTGCCAGTATTCT 142695 Query 38096 TTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATT 38154 || || || | || ||| || || | ||| | ||||||||||||| ||| | | | | Sbjct 142694 TT-TTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAAT 142636 Query 38155 GCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTT 38214 || ||||| | || | ||| || |||| | |||||| ||||| | ||||||| |||| Sbjct 142635 GCCCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTT 142576 Query 38215 AACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCT 38274 ||||| || || | ||||| ||| || ||| | || | |||| | ||||| |||||| Sbjct 142575 AACATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAGCT 142516 Query 38275 CGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTG 38333 | ||| | | | | || || || ||||||||| ||| ||||| || || ||||| Sbjct 142515 CTGATA-CAGTGAACATGAAGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTG 142457 Query 38334 TTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACT 38393 ||| | || ||| |||| || || ||||||||||| || || | | || |||||| Sbjct 142456 TTTCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGA 142397 Query 38394 AGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCA 38453 |||| |||||| |||||| | || |||||| |||||| || || |||| | Sbjct 142396 TGACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAAATA 142337 Query 38454 TTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACC 38513 || || ||||| | ||||| || | || | ||| || || | || || || || Sbjct 142336 CTTCTCAGACAATAAGTTATAGGTGTTAATAGCTGAATCAATGTCTTCTCCATGTATTCC 142277 Query 38514 TAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 | || ||| | ||||||||||||||||||||| || Sbjct 142276 AATAGCTACACGCATTAGCATATGTTGTGGTCTCTC 142241 >seq409 Length=488447 Score = 114 bits (126), Expect = 1e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 ||||| || ||||||| | |||||||| || |||| |||||||||||||||||| || Sbjct 76213 TATGTGTCAATTAATAGAGAGTACATTTCAGAGTGAACATTTTCCATAGCTATTTGGAAC 76272 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 |||||||| ||| ||||| | | || || || |||| | ||| ||| ||| Sbjct 76273 CCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTGAAAACCGCTCCACTAGATTT 76332 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAA 12072 ||||| ||||| |||||| | |||||||||||||| | |||||||| || Sbjct 76333 TCATTGACAATTCCATCAGATGCGGCAAAAAATGCTAGAACGTGTTTTATGAA 76385 Score = 113 bits (124), Expect = 4e-20 Identities = 158/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| ||| || |||||| || || || || ||||| | ||| || || ||| Sbjct 75179 TCATCTCTTGATATAAGCTCATTACTGAAAGTCAAGCCAGGCATGAGTCCACGCTTCTTT 75238 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||| |||| |||||| || || || || || ||||| ||||||||||||||| Sbjct 75239 AACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACAGCTGCAAATGCT 75298 Query 11774 ACTACTCTTTCTCCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCT 11830 | | | ||||||| | | | ||||| | ||||||| | ||||| || || Sbjct 75299 ATAATACGTTCTCCAAACGTGGCAGTTTTGCTTGCAATCCATTGTAGTGCCCAGTCCGCC 75358 Query 11831 TTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 |||||||| || || || ||||||||||| |||||||| Sbjct 75359 TTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAATAA 75399 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 12116 TTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTC 12175 ||||||||||| ||||||||||| |||||||| || | | || ||| ||||||| | Sbjct 76505 TTTGATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTTTTGTACATTTCC 76564 Query 12176 CAGATATCATGATACTTAATAGGGAAAATAACGAACCTA 12214 || ||||| |||||| |||||||| ||||| || ||| Sbjct 76565 CAAATATCTGGATACTGGATAGGGAATATAACAAATCTA 76603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468288435094960