Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4146 179 4e-40 seq3626 147 2e-30 seq4459 145 8e-30 seq4182 138 1e-27 >seq4146 Length=100757 Score = 179 bits (198), Expect = 4e-40 Identities = 344/502 (69%), Gaps = 4/502 (1%) Strand=Plus/Plus Query 20797 CCGACATTGGGGTTCGCGCCATTGCCGCCCGGAAACTCCCAATCAATGTCGACGCCATCA 20856 |||| || || || || || || || || || ||||||||||||||||| || ||||| Sbjct 16126 CCGAGGTTAGGATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCATCG 16185 Query 20857 AAGAATTTCCACGTTTCTAGATACTCTTGGACCGAATCGATAAACGTTTGGCGCACGATC 20916 ||||||||||| |||| || | |||| || || | | ||| | | | | Sbjct 16186 AAGAATTTCCAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAAACGATCTCTTTTTACC 16245 Query 20917 TTGTCGTGCATATGGAAAAATGGGTCCGAAAGTGTCCAGCCCCCGATAGACGGTAACACT 20976 || || | | | | | ||||| || | ||||||||||| ||||| || || | || Sbjct 16246 TTATCATCAAAAAAGTAGAATGGATCTGCCAGTGTCCAGCCTCCGATTGATGGAAGAACC 16305 Query 20977 TTGAGATGCGGGTTCGCCAATTTCGCGGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGT 21036 || | || || | || |||| | ||| ||||| ||||||||||||||||| ||| Sbjct 16306 TTCAAATCAGGTCTAGCTTGTTTCAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGT 16365 Query 21037 TCGTTCCATGCGCTGACACCTTTCTGGGGTTTCTGTATGGCCGCCCACGGATCGTGAATG 21096 |||||||| | | | ||| ||||| ||||| |||| || ||||| || || || || Sbjct 16366 TCGTTCCAGGAGGACAAACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCATGGATA 16425 Query 21097 GCCACCTTAAAGTCGGCACGGCCCGC-GCACGAACGTTGCAACGCTTCGAAACTGCCCGG 21155 | || || ||||| | | |||||| ||| || | |||||| |||| |||||| || Sbjct 16426 GAAACTTTGAAGTCCTCTC-GCCCGCTGCAAGATCTTTGCAAAGCTTGGAAACTTCCTTC 16484 Query 21156 GA-CACTTTTGAGCGCATCGTTGATGCCTTCGCCTCCGCACATGGGCACGAAACCGTACA 21214 || ||||| | | ||||| || || || || || || ||||| | || ||||| | Sbjct 16485 GATTTCTTTTAAAC-TGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTAAA 16543 Query 21215 ACAAATGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGGCGCGGATACACAC 21274 | ||| | | || || |||| || ||||| || || || | | || || |||| Sbjct 16544 GAAGATGTGTAAGATTTGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACAC 16603 Query 21275 CCCATTCGACAAAGTATGCTCC 21296 |||| || ||||| || ||||| Sbjct 16604 CCCACTCCACAAAATAAGCTCC 16625 >seq3626 Length=201135 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||||||| || || || ||||||| |||||| || ||||||||||| ||||| Sbjct 59291 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAG 59232 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| | ||||| |||||||| || || |||| || || |||||||||||||| Sbjct 59231 AGTGTGCGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGTCGCTGCTGATCGGGAGGG 59172 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | ||||| | ||| | ||| || | ||||| || Sbjct 59171 ATACCTTCTTTGTC-CTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAAC 59113 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | || || || || | || || |||||||| ||||| Sbjct 59112 CTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACGAATATCTGCAT 59065 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| | ||||| || ||||||||||||||||| || || Sbjct 59519 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAA 59460 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| |||||||| |||||| | || || |||||||| || ||||| Sbjct 59459 AGGGTACGTCCGTCTTCCAGCTGTTTTCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGG 59400 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| |||||| |||| | ||| | || || | ||||| || Sbjct 59399 ATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACT 59340 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||| || || | ||||| || || |||||||| Sbjct 59339 TCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAAATTTGCAT 59293 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| | ||||| || ||||||||||||||||| || || | Sbjct 59975 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAC 59916 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| || ||||| |||||| |||| || || || || || ||||| Sbjct 59915 AGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 59856 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| |||||| ||| | | || | |||||| | || || || Sbjct 59855 ATGCCTTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTGTCTGAAGGTTCAACT 59796 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || | || || || || || |||||| Sbjct 59795 TCCAAAGTAATAGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCATA 59748 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| || | ||||| || ||||||||||||||||| || || | Sbjct 59747 CCACCTCGCAGACGCAGTACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAC 59688 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| | ||||| |||||| |||| || || || || || ||||| Sbjct 59687 AGGGTTCGCCCATCTTCCAATTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 59628 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| |||||| ||| | | || | |||||| | || || || Sbjct 59627 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGTTCAACT 59568 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || | || || || || || |||||| Sbjct 59567 TCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAGATCTGCATA 59520 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 || ||| ||||| | ||| || || ||||| | || || || |||||||||||||| || Sbjct 60207 ATTGCCACCTCGGAGACGTAATACCAAGTGCAAAGTGGATTCCTTTTGAATGTTATAGTC 60148 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 | || | | ||||| || || || |||||| |||| || || || || || || Sbjct 60147 AGAAAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGG 60088 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 ||| |||||||| ||||| |||||| ||| | | || | |||||| | || || Sbjct 60087 AGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGTTC 60028 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || | ||||| || || | || || || || || |||||| Sbjct 60027 AACTTCTAATGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCATA 59976 >seq4459 Length=154925 Score = 145 bits (160), Expect = 8e-30 Identities = 485/744 (65%), Gaps = 13/744 (2%) Strand=Plus/Minus Query 153072 TTGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTACT-GTGAAACGG 153130 || || |||||||||||||| || ||||| ||||| | | ||| ||||| || Sbjct 143661 TTAACGACTTGAAATTCGCCTGATAATACTCGTCTTTGGTATATATTTGAAGTGAAT-GG 143603 Query 153131 TTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCAC 153190 |||||| || || || || ||||| || || || | ||||| ||||| ||||| Sbjct 143602 TTCAAAGGATTCATTATTGCCAAGTATCTGAGCCGTAGATGCCGTTGGCATAGGCGCCAG 143543 Query 153191 AAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACC-AGTCCC 153249 |||| |||||||| | ||| ||||| ||| || |||| || | ||| | |||| Sbjct 143542 TAGCAGAGAATTACGAATTCCATGTTTAGCTATTTTT-TCTTTAAGAGCAACCCAATCCC 143484 Query 153250 ATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGC 153309 | | ||| || || |||||||| ||| ||||||| |||||||||||| | | Sbjct 143483 AGAGATCAGTGGGAGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGAC 143424 Query 153310 TACCGGCAAACGTGCTATACGGCTCACTGTCAGAC-GCCAGTTTCAAACTGGCATCGAGC 153368 |||| || | | ||||| ||| || | | || | || | || || || | Sbjct 143423 TACCTTCATATGAACTATA-AACTCCCTCTTTCTCTGCTAATTCACAGCTAGCTTCCAAA 143365 Query 153369 GCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACG 153428 || | | ||| | ||| || | ||||||| ||| | || | || || || | Sbjct 143364 GCTCCGTAATAGATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCA 143305 Query 153429 TACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGA 153488 || || ||||| || ||||| ||||| || |||||||| | ||||| ||||| || Sbjct 143304 TAAGGGTAGCGCATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGT 143245 Query 153489 CGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATT 153548 | ||| |||||||| || ||||| || || ||| ||||| ||||| || |||||| Sbjct 143244 CTATGTCGCATATTGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATT 143185 Query 153549 TTATTTAAACTAATCACGACATG--TTTCACCACAGAATGCAACAGTTGAAAATCAAACG 153606 ||||| || | | ||| ||| || | ||| | ||||| | | Sbjct 143184 TTATT--AAGGTTTTGTGTTATGATTTTTGTAACTTCTTTTAACTTTCCAAAATTGTATG 143127 Query 153607 TTC---CATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTT 153663 ||| ||| | | | | | | || | ||||| || || || || || || || || Sbjct 143126 TTCTATCATCATTTACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTT 143067 Query 153664 CGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGC 153723 | || | ||||| ||||||||| | ||| | ||| || ||||| || || Sbjct 143066 CATCTACTGATGTATATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTA 143007 Query 153724 AATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGG 153783 ||| | ||||| || || | |||||| | || ||||||| |||| |||| ||||| | Sbjct 143006 GATTTTTCTGATTACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTG 142947 Query 153784 TTTCGGCTTGAATTTCTATAATAG 153807 |||| |||| ||||| ||||| Sbjct 142946 TTTCAACTTGTGCTTCTACAATAG 142923 >seq4182 Length=188933 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||| || | || | ||||||||| || ||||| || || ||| Sbjct 74272 CCTCCTCTTAACCTCAACACAAGATGTAACGTAGACTCCTTCTGAATATTGTAGTCGGAT 74331 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| ||||||||||||||| |||||| |||||||||||| || || Sbjct 74332 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGA 74391 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| | ||||| | ||| | || |||| | |||||| Sbjct 74392 ATACCTTCTTTATC-TTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCCTCCAC 74450 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | || || || || | |||||||||||||| ||||| Sbjct 74451 CTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTTACGAATATCTGCAT 74498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495813741912800