Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq409 116 4e-21 >seq409 Length=488447 Score = 116 bits (128), Expect = 4e-21 Identities = 162/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 |||||||||| ||||| || || ||||| || || || ||||| | ||| || || Sbjct 75177 CCTCATCTCTTGATATAAGCTCATTACTGAAA--GTCAAGCCAGGCATGAGTCCACGCTT 75234 Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 ||||||||||| || | ||| || || || || || || ||||| || || ||||| Sbjct 75235 CTTTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACAGCTGCAAA 75294 Query 13800 CGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 ||||| | ||||||||||||| || ||||| ||| ||||||| | ||||| || Sbjct 75295 TGCTATAATACGTTCTCCAAACGTGGCAGTTTTGCTTGCAATCCATTGTAGTGCCCAGTC 75354 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 | || ||||||| | || || ||||| || ||||| ||||| Sbjct 75355 CGCCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAATAA 75399 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 ||||||||| ||||| | || |||||||||||||| | ||||| |||||||| || Sbjct 76209 AATGTATGTGTCAATTAATAGAGAGTACATTTCAGAGTGAACATTTTCCATAGCTATTTG 76268 Query 13989 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAA 14048 || ||||| || |||| || || | ||| ||||| |||| | || | | Sbjct 76269 GAACCCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTGAAAACCGCTCCACTAG 76328 Query 14049 GTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14108 |||||||| ||||| |||||| || ||||||||||| | | || ||| || || | Sbjct 76329 ATTTTCATTGACAATTCCATCAGATGCGGCAAAAAATGCTAGAACGTGTTTTATGAAATG 76388 Query 14109 TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149 | ||| || || | ||| |||||| | |||||||| Sbjct 76389 TCTCTCACAATCCTTTAAACTTTCCCAATCCGGTAAATCCT 76429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478347357932760