Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4459 609 3e-169 seq409 111 2e-19 >seq4459 Length=154925 Score = 609 bits (674), Expect = 3e-169 Identities = 1201/1773 (68%), Gaps = 12/1773 (1%) Strand=Plus/Minus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 || || | |||||| || || | | | ||| | ||| ||||||| ||| ||||||||| Sbjct 144009 TTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTTGTACGTAAATAATACATGCCT 143950 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||||| ||| | |||| | |||||||| || ||| ||||| ||| | || Sbjct 143949 GTTTTTAAACCCATTTTCCAAGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGT 143890 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 || |||| |||||||| | ||||||||||| || || || || || || || |||||| Sbjct 143889 TCAGCTACATGAATATTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCC 143830 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 71030 || | || | || || | ||||||||| | || ||||| || || || | |||| Sbjct 143829 ATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCTGA-TATC 143771 Query 71031 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGAT 71087 || |||| |||| ||||||||| || ||| || || ||| |||||| || Sbjct 143770 TTTGGGAATAGTTTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGATTTTTCAT 143711 Query 71088 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTG 71147 || || | |||||| | | | || ||| |||| | |||||| ||||||| ||||| Sbjct 143710 GTCATCGTCCCATAAATCTGCTTGAGTCAAATCTCTTAAAAGATGATGATTAACGACTTG 143651 Query 71148 AAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTC 71207 |||||| || || ||||||| | ||| ||||| || | ||||| | || || Sbjct 143650 AAATTCGCCTGATAATACTCGTCTTTGGTATATATTTGAAGTGAATGGTTCAAAGGATTC 143591 Query 71208 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATT 71267 |||||| || | || ||||| || ||||| || |||||||| |||| | ||| ||| Sbjct 143590 ATTATTGCCAAGTATCTGAGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAATT 143531 Query 71268 TCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGG 71327 | || |||||| ||||| ||||| |||| |||||| ||| ||||| | || Sbjct 143530 ACGAATTCCATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTGGG 143471 Query 71328 TACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGC-GTATGATCCTGCATATG 71386 || || | ||| | | | | ||| |||||| Sbjct 143470 AGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTA-CCTTCATATG 143412 Query 71387 TATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAA 71446 | || ||| ||||| || |||| |||||| || || || || ||||| ||||| | Sbjct 143411 AACTATAAACTCCCTCTTTCTCTGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATAGA 143352 Query 71447 TGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTA 71506 | || || || |||| | || | ||||| || ||| | || || | Sbjct 143351 TAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCGCA 143292 Query 71507 AGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTAT 71566 || | ||| || || ||||| ||||| || |||||||| || ||||| |||| | ||| Sbjct 143291 TCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCATAT 143232 Query 71567 TAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 71626 | || ||| ||||||||||| ||||||||||| | ||||||||||||||| || ||| Sbjct 143231 TGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTAAGGTTTT 143172 Query 71627 TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCC---CATCTATTA 71683 ||| | ||| || || |||| || ||||| || | | |||| ||| Sbjct 143171 GTGTTATGATTTTTGTAACTTCTTTTAACTTTCCAAAATTGTATGTTCTATCATCATTTA 143112 Query 71684 CAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCAT 71743 |||||| ||||| |||| ||| || | |||||| || ||||| |||| | | || Sbjct 143111 CAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGATGTAT 143052 Query 71744 ATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 71803 ||| || ||||| || || ||||||||||| || || ||||||| ||||| ||||||| Sbjct 143051 ATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATTAC 142992 Query 71804 TCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 71863 ||||| ||||||| | ||| || || | || || ||||| || ||||||| || | || Sbjct 142991 TCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGCTT 142932 Query 71864 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTT 71923 ||| ||| || ||||| | ||| | ||| ||| | || |||| ||||| | | Sbjct 142931 CTACAATAGCCTTCCATAAAACTTGTGCCCTTACTTGTTTGACAAATCTTTTTTCATTCT 142872 Query 71924 CGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATT 71983 | || | | ||| | ||| ||||| ||||||||| || | || |||||||| | Sbjct 142871 CATACTTTTCATACAGAGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAGGACAGT 142812 Query 71984 CATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAG 72043 ||| ||||||||||| ||| | | ||| | | |||| ||||||||| | ||| | Sbjct 142811 CATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAATCTG 142752 Query 72044 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTT 72103 | ||||| | ||| ||| | || || | || | || || || || |||||||||| Sbjct 142751 GTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTGCCAGTATTCTTTT 142692 Query 72104 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 72163 | ||||| | ||| | | | ||| |||||||| ||||| || |||| || | | | Sbjct 142691 TCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAATGCCC 142632 Query 72164 CCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 72223 | || || ||||| || || ||||||| ||||| || ||| | ||||| ||||| |||| Sbjct 142631 CTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTTAACA 142572 Query 72224 TTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAA 72283 |||| | || ||||| ||| ||||||| || || | ||| | | || | || | | Sbjct 142571 TTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAGCTCTGA 142512 Query 72284 TATTGCTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 72342 || | || ||| || || || || ||||| |||||| || || || ||| |||| Sbjct 142511 TACAGTGAACATGA-AGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTGTTTC 142453 Query 72343 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 72402 | || ||||| || ||||| ||||| ||||| ||||| | || ||||| ||| Sbjct 142452 AGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGATGAC 142393 Query 72403 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 72462 | ||| | | ||| | ||| |||||| |||||| ||||| || || | || Sbjct 142392 AATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAAATACTTC 142333 Query 72463 TCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACC 72522 ||||||| || || || || | ||||||||| || || || | ||||||||| | Sbjct 142332 TCAGACAATAAGTTATAGGTGTTAATAGCTGAATCAATGTCTTCTCCATGTATTCCAATA 142273 Query 72523 GCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || |||||||||| |||||| || ||||| ||| Sbjct 142272 GCTACACGCATTAGCATATGTTGTGGTCTCTCA 142240 >seq409 Length=488447 Score = 111 bits (122), Expect = 2e-19 Identities = 135/182 (74%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || |||||||| || | |||||| ||||| ||||| || || || || Sbjct 75215 CCAGGCATGAGTCCACGCTTCTTTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAA 75274 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT--CATGTA 42242 || || ||||| || ||||| || |||| | |||||| | |||| | | | || | Sbjct 75275 ATACCCTCTACAGCTGCAAATGCTATAATACGTTCTCCAAACGTGGCAGTTTTGCTTGCA 75334 Query 42243 -TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||| | | | ||||| || ||||||||||| |||||||||| |||||||| |||||| Sbjct 75335 ATCCATTGTAGTGCCCAGTCCGCCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTA 75394 Query 42302 AA 42303 || Sbjct 75395 AA 75396 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598 ||| || || |||| |||| ||| |||||||| || |||||||| || ||||| || ||| Sbjct 76494 TCAATGTTACCTTT-GATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTT 76552 Query 42599 TTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTA 42649 || ||||| | ||| ||||| |||| || || ||||| |||||||||||| Sbjct 76553 TTGTACATTTCCCAAATATCTGGATACTGGATAGGGAATATAACAAATCTA 76603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670800618662840