Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq688 161 8e-35 seq4182 125 6e-24 seq3626 109 5e-19 SEQ23448 104 2e-17 >seq688 Length=109112 Score = 161 bits (178), Expect = 8e-35 Identities = 211/291 (73%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 24855 GCACACGATTCGGTCACGACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTAT 24914 ||||||| ||| | | |||||||||||||| || || || ||||||||| | ||||| Sbjct 9357 GCACACGCTTCCGATATAACCTTTTGTACATACTCTCGTCCTTTGACAAGTTGGACGTAG 9416 Query 24915 GCGCAGCGCCCGAACCAAAGCGCGTGTTGTTGCCACGG---CTCGTCATCTTGCTCCCAG 24971 || || || |||||||| | || ||||| | ||| || ||||||| | |||||| Sbjct 9417 GCACATCGATCGAACCAACGTGCATGTTGCTCCCAGGGAATATCGTCATTT---TCCCAG 9473 Query 24972 TTGTCCAAACCGCCGTCGCAGTAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAG 25031 | | |||||| ||||| ||| |||| ||||| |||||| | | || ||||| ||| Sbjct 9474 TCCTTCAAACCACCGTCACAGAAAAAGCATTTCGTTTTGTCTCCTTGACCAGTGTAGAAG 9533 Query 25032 AAGCCAGCTTCTGCAAGTTTTTCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAAT 25091 || |||||||| || || | || ||| ||| || || ||| ||||| || |||| Sbjct 9534 AAACCAGCTTCGGCTAGCTCCTCAGGCTTTTGTCGCATACTGCGAGGCCAATCGACAAAT 9593 Query 25092 GTGCGCAAACGCGCAGCTTCTATCGCATATTTGGGGTGCGCGGGTGGCGGA 25142 || || | ||| |||||||| |||||| |||||| |||||| | ||| Sbjct 9594 GTACGGAGACGGGCAGCTTCGGATGCATATCGGGGGTGAGCGGGTCGTGGA 9644 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 25236 AACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCCTCCCAG 25295 || || ||||| || ||||| |||||||||| ||| || ||||| || || |||| Sbjct 9750 AATGGACATTGGGGTGCCCACCTTTGATGATCTACAGCAGGATCGTCCCCTTCCACCCAT 9809 Query 25296 CGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAGTAGTAG 25355 | ||| || || |||||||| || || ||||||||||| ||||| || || | |||||| Sbjct 9810 CTCATGATTTCGACTTTGCAGAAAGCACAGCGCACTTCATCGCCCCGGCCTAGATAGTAG 9869 Query 25356 AACCCATT 25363 || || || Sbjct 9870 AATCCGTT 9877 >seq4182 Length=188933 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 18811 TTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATC 18870 ||| ||||||| ||||| ||||| | || |||||||||||||| ||||||||||| || Sbjct 74268 TTTACCTCCTCTTAACCTCAACACAAGATGTAACGTAGACTCCTTCTGAATATTGTAGTC 74327 Query 18871 CGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCAC 18930 | | ||| | | || |||||||||||||| ||| | || | | ||||||||| Sbjct 74328 GGATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGG 74387 Query 18931 GGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTC 18990 || | || ||||| || |||||| |||||| | | | ||||||| || ||| Sbjct 74388 TGGAATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCCTC 74447 Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 | |||| ||| |||||||| || || | ||||| || || || |||||| Sbjct 74448 CACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTTACGAATATCTGCATT 74499 >seq3626 Length=201135 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||| |||||||| ||||| || | | || |||| ||||||||||| || Sbjct 59489 GTGGACTCTTTTTGAATGTTGTAGTCAGAAAGGGTACGTCCGTCTTCCAGCTGTTTTCCA 59430 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| || | ||||| ||| || | ||| |||||||| |||||| ||| Sbjct 59429 GCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCTTT 59370 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| |||||| ||||| ||| | |||||| || |||||||| | |||| Sbjct 59369 ACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGTCTTACCTGTGAGAGTT 59310 Query 19025 TTGACAAAAATTTGCATT 19042 || ||||||||||||||| Sbjct 59309 TTAACAAAAATTTGCATT 59292 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| ||||| || | ||| |||| ||| | |||||| ||||||||||| |||||||| | Sbjct 59293 TTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAG 59234 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| | || || |||||||| || || | ||||||| ||||||||| | Sbjct 59233 AGAGTGTGCGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGTCGCTGCTGATCGGGAG 59174 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| |||||| |||||| | | | ||||| ||||| Sbjct 59173 GGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAA 59114 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | ||| |||||||| || || | || || || || || |||||||| Sbjct 59113 CCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACGAATATCTGCATTTT 59062 >SEQ23448 Length=38375 Score = 104 bits (114), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34581 GGCGGCGTGGGACTGAACTTAACCGGCGGCAATCACATAATTATGTTGGAGCCCCACTGG 34640 || ||||||||||||||| | ||| | ||| ||| | | || |||| ||||||||| Sbjct 9690 GGTGGCGTGGGACTGAACCTGTGCGGGGCCAACCACCTGCTGGTGCTGGACCCCCACTGG 9749 Query 34641 AACCCGCAGATCGAACTGCAGGCGCAAGACCGCATCCACCGCATGGGCCA 34690 ||||||||| |||| | ||||||||| ||||||||| ||||| ||||||| Sbjct 9750 AACCCGCAGCTCGAGCAGCAGGCGCAGGACCGCATCTACCGCGTGGGCCA 9799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414368881874446