Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq4182 122 6e-23 seq3626 91.5 9e-14 >seq4182 Length=188933 Score = 122 bits (134), Expect = 6e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 33135 AATCTTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGT 33194 ||| || ||| |||||||||| |||||| | ||| || || ||||| || || ||||||| Sbjct 74264 AATTTTTACCTCCTCTTAACCTCAACACAAGATGTAACGTAGACTCCTTCTGAATATTGT 74323 Query 33195 AATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGT 33254 | || || || || | || |||| || || ||| ||| || ||||||||||| | Sbjct 74324 AGTCGGATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGAT 74383 Query 33255 CCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 ||| || || |||||||| || ||| |||||| ||| ||| || ||| | Sbjct 74384 CCGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAG 74443 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || || ||||| |||||||| ||||||||||| || ||||| Sbjct 74444 CCTCCACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTTACGAATATCTGCAT 74498 >seq3626 Length=201135 Score = 91.5 bits (100), Expect = 9e-14 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||||||||| || ||||| ||||| | | || ||| |||| || |||||| Sbjct 59489 GTGGACTCTTTTTGAATGTTGTAGTCAGAAAGGGTACGTCCGTCTTCCAGCTGTTTTCCA 59430 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCGCTAATCGCCTGT 33289 ||| || | ||||||||||||| || ||||||||||| || | | ||||| Sbjct 59429 GCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCC--- 59373 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 ||||| ||| || || || || | || || | || ||||| || || || ||| Sbjct 59372 TTTACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGTCTTACCTGTGAGA 59313 Query 33350 GTTTTTACGAAAATTTGCAT 33369 ||||| || ||||||||||| Sbjct 59312 GTTTTAACAAAAATTTGCAT 59293 Score = 84.2 bits (92), Expect = 1e-11 Identities = 142/204 (70%), Gaps = 14/204 (7%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----TCATCCAATTGCTT 33228 || ||||||||||| || ||||| ||||||| | ||| | || |||||||| || Sbjct 59717 GTGGACTCTTTTTGAATGTTGTAGTCAGACA----GGGTTCGCCCATCTTCCAATTGTTT 59662 Query 33229 TCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGC 33285 |||| ||| || | || || ||||| | || |||||||| || || | | | || Sbjct 59661 TCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGC 59602 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 ||| || | | ||| ||||| |||| ||| |||| ||| || || ||||| || Sbjct 59601 ---TTTGACATTCTCAATTGTGTCTGAAGGTTCAACTTCCAAAGTAATGGTCTTTCCAGT 59545 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 |||||| || || || || ||||| Sbjct 59544 AAGAGTCTTAACAAAGATCTGCAT 59521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318620801168382